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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTAATGTGGCAGATGCAGCTACTCGGCACACAGCTCAGCGCAAGTTCAAGGAGTTTATCCGTAGCTTTGGCGATGTGAAGGGACCATTTCCTTACAGgtttgtgttgtgtatttcgagtatgtgtgtctctcgacctggcatttcgcagctaaatgtcacggttcccaaattttctgtaatctcatgtcaagaagcgtggcag

Basic information

species Physcomitrella patens
transcript PP1S355_49V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18359076|gb|BJ191136.1|BJ191136
EST:     AAGGAGTTTATCCGTAGCTTTGGCGATGTGAAGGGACCATTTCCTTACAG                         GGAGTCGCTGCTGCAAAA
genomic: AAGGAGTTTATCCGTAGCTTTGGCGATGTGAAGGGACCATTTCCTTACAGgtttgtgttg ... agcgtggcagGGAGTCGCTGCTGCAAAA
EST: gi|18342645|gb|BJ174680.1|BJ174680
EST:     AAGGAGTTTATCCGTAGCTTTGGCGATGTGAAGGGACCATTTCCTTACAG                         GGAGTCGCTGCTGCAAAATCCGAATGTTCTGCAAGTTGCATTGGAGGACCT
genomic: AAGGAGTTTATCCGTAGCTTTGGCGATGTGAAGGGACCATTTCCTTACAGgtttgtgttg ... agcgtggcagGGAGTCGCTGCTGCAAAATCCGAATGTTCTGCAAGTTGCATTGGAGGACCT
EST: gi|18349563|gb|BJ181613.1|BJ181613
EST:     AAGGAGTTTATCCGTAGCTTTGGCGATGTGAAGGGACCATTTCCTTACAG                         GGAGTCGCTGCTGCAA
genomic: AAGGAGTTTATCCGTAGCTTTGGCGATGTGAAGGGACCATTTCCTTACAGgtttgtgttg ... agcgtggcagGGAGTCGCTGCTGCAA
EST: gi|18365348|gb|BJ197423.1|BJ197423
EST:     AAGGAGTTTATCCGTAGCTTTGGCGATGTGAAGGGACCATTTCCTTACAG                         GGAGTCGCTGCTGCAAAATCCGAATGTTCTGCAAGTTGCATCGGAGGACCT
genomic: AAGGAGTTTATCCGTAGCTTTGGCGATGTGAAGGGACCATTTCCTTACAGgtttgtgttg ... agcgtggcagGGAGTCGCTGCTGCAAAATCCGAATGTTCTGCAAGTTGCATTGGAGGACCT
EST: gi|18349306|gb|BJ181355.1|BJ181355
EST:     AAGGAGTTTATCCGTAGCTTTGGCGATGTGAAGGGACCATTTCCTTACAG                         GGAGTCGCTGCTGCAAAATCCGAATGTTCTGCAAGTTGCATT
genomic: AAGGAGTTTATCCGTAGCTTTGGCGATGTGAAGGGACCATTTCCTTACAGgtttgtgttg ... agcgtggcagGGAGTCGCTGCTGCAAAATCCGAATGTTCTGCAAGTTGCATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGTTAATGTGGCAGATGCAGCTACTCGGCACACAGCTCAGCGCAAGTTCAAGGAGTTTATCCGTAGCTTTGGCGATGTGAAGGGACCATTTCCTTACAGgtttgtgttgtgtatttcgagtatgtgtgtctctcgacctggcatttcgcagctaaatgtcacggttcccaaattttctgtaatctcatgtcaagaagcgtggcag

- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG