1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCGTGTGGTGGTGCAGTTCGGGGCGACATGAGTACGGAGAAGGAGCGCGAGAGCTATGTGTATATGGCGAAACTCGCCGAGCAGGCGGAGCGTTACGATGgtgcgtgcatgtgcgcgtgctttgttcttgatttttggagttggagtttatttccttatcgtttcctgtcgtcgctgttttcgaggggatggcgttgttt...
species | Physcomitrella patens |
transcript | PP1S348_15V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGCTATGTGTATATGGCGAAACTCGCCGAGCAGGCGGAGCGTTACGATG AGATGGTGGAGTCGATGAAGAAAGTGGCGAAGCTTGACGTGGAGCTGACGGEST: gi|208390694|gb|DC937850.1|DC937850
genomic: GAGCTATGTGTATATGGCGAAACTCGCCGAGCAGGCGGAGCGTTACGATGgtgcgtgcat ... tgaattgcagAGATGGTGGAGTCGATGAAGAAAGTGGCGAAGCTTGACGTGGAGCTGACGG
EST: GAGCTATGTGTATATGGCGAAACTCGCCGAGCAGGCGGAGCGTTACGATG AGATGGTGGAGTCGATGAAGAAAGTGGCGAAGCTTGGCGTGGAGCTGACGGEST: gi|208385562|gb|DC937107.1|DC937107
genomic: GAGCTATGTGTATATGGCGAAACTCGCCGAGCAGGCGGAGCGTTACGATGgtgcgtgcat ... tgaattgcagAGATGGTGGAGTCGATGAAGAAAGTGGCGAAGCTTGACGTGGAGCTGACGG
EST: GAGCTATGTGTATATGGCGAAACTCGCCGAGCAGGCGGAGCGTTACGATG AGATGGTGGAGTCGATGAAGAAAGTGGCGAAGCTTGACGTGGAGCTGACGGEST: gi|162270401|gb|FC447101.1|FC447101
genomic: GAGCTATGTGTATATGGCGAAACTCGCCGAGCAGGCGGAGCGTTACGATGgtgcgtgcat ... tgaattgcagAGATGGTGGAGTCGATGAAGAAAGTGGCGAAGCTTGACGTGGAGCTGACGG
EST: GAGCTATGTGTATATGGCGAAACTCGCCGAGCAGGCGGAGCGTTACGATG AGATGGTGGAGTCGATGAAGAAAGTGGCGAAGCTTGACGTGGAGCTGACGGEST: gi|67718418|gb|BJ968677.1|BJ968677
genomic: GAGCTATGTGTATATGGCGAAACTCGCCGAGCAGGCGGAGCGTTACGATGgtgcgtgcat ... tgaattgcagAGATGGTGGAGTCGATGAAGAAAGTGGCGAAGCTTGACGTGGAGCTGACGG
EST: GAGCTATGTGTATATGGCGAAACTCGCCGAGCAGGCGGAGCGTTACGATG AGATGGTGGAGTCGATGAAGAAAGTGGCGAAGCTTGACGTGGAGCTGACGGEST: gi|208370697|gb|DC936157.1|DC936157
genomic: GAGCTATGTGTATATGGCGAAACTCGCCGAGCAGGCGGAGCGTTACGATGgtgcgtgcat ... tgaattgcagAGATGGTGGAGTCGATGAAGAAAGTGGCGAAGCTTGACGTGGAGCTGACGG
EST: GAGCTATGTGTATATGGCGAAACTCGCCGAGCAGGCGGAGCGTTACGATG AGATGGTGGAGTCGATGAAGAAAGTGGCGAAGCTTGACGTGGAGCTGACGGEST: gi|67719261|gb|BJ969520.1|BJ969520
genomic: GAGCTATGTGTATATGGCGAAACTCGCCGAGCAGGCGGAGCGTTACGATGgtgcgtgcat ... tgaattgcagAGATGGTGGAGTCGATGAAGAAAGTGGCGAAGCTTGACGTGGAGCTGACGG
EST: GAGCTATGTGTATATGGCGAAACTCGCCGAGCAGGCGGAGCGTTACGATG AGATGGTGGAGTCGATGAAGAAAGTGGCGAAGCTTGACGTGGAGCTGACGGEST: gi|100373556|gb|BY948980.1|BY948980
genomic: GAGCTATGTGTATATGGCGAAACTCGCCGAGCAGGCGGAGCGTTACGATGgtgcgtgcat ... tgaattgcagAGATGGTGGAGTCGATGAAGAAAGTGGCGAAGCTTGACGTGGAGCTGACGG
EST: GAGCTATGTGTATATGGCGAAACTCGCCGAGCAGGCGGAGCGTTACGATG AGATGGTGGAGTCGATGAAGAAAGTGGCGAAGCTTGACGTGGAGCTGACGGEST: gi|208387877|gb|DC929221.1|DC929221
genomic: GAGCTATGTGTATATGGCGAAACTCGCCGAGCAGGCGGAGCGTTACGATGgtgcgtgcat ... tgaattgcagAGATGGTGGAGTCGATGAAGAAAGTGGCGAAGCTTGACGTGGAGCTGACGG
EST: GAGCTATGTGTATATGGCGAAACTCGCCGAGCAGGCGGAGCGTTACGATG AGATGGTGGAGTCGATGAAGAAAGTGGCGAAGCTTGACGTGGAGCTGACGGEST: gi|162269402|gb|FC445270.1|FC445270
genomic: GAGCTATGTGTATATGGCGAAACTCGCCGAGCAGGCGGAGCGTTACGATGgtgcgtgcat ... tgaattgcagAGATGGTGGAGTCGATGAAGAAAGTGGCGAAGCTTGACGTGGAGCTGACGG
EST: GAGCTATGTGTATATGGCGAAACTCGCCGAGCAGGCGGAGCGTTACGATG AGATGGTGGAGTCGATGAAGAAAGTGGCGAAGCTTGACGTGGAGCTGACGGEST: gi|208354137|gb|DC957385.1|DC957385
genomic: GAGCTATGTGTATATGGCGAAACTCGCCGAGCAGGCGGAGCGTTACGATGgtgcgtgcat ... tgaattgcagAGATGGTGGAGTCGATGAAGAAAGTGGCGAAGCTTGACGTGGAGCTGACGG
EST: GAGCGTTACGATG AGATGGTGGAGTCGATGAAGAAAGTGGCGAAGCTTGACGTGGAGCTGACGG
genomic: GAGCGTTACGATGgtgcgtgcat ... tgaattgcagAGATGGTGGAGTCGATGAAGAAAGTGGCGAAGCTTGACGTGGAGCTGACGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGTGTGGTGGTGCAGTTCGGGGCGACATGAGTACGGAGAAGGAGCGCGAGAGCTATGTGTATATGGCGAAACTCGCCGAGCAGGCGGAGCGTTACGATGgtgcgtgcatgtgcgcgtgctttgttcttgatttttggagttggagtttatttccttatcgtttcctgtcgtcgctgttttcgaggggatggcgttgttt
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