1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCATCGTTGCGTCCAGTTTTACAAGTGCAAGATTTGTGAGCTCCAGGGCGCTGCGATGTCGCGGTACTTCCTTCGTgtaagtgaactgctccagtagctgcacatgtgttgagattttttccgggagctatttaggtttggaattggttgagtttgattagggctaaaccctaaag...
species | Physcomitrella patens |
transcript | PP1S347_31V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCAAGATTTGTGAGCTCCAGGGCGCTGCGATGTCGCGGTACTTCCTTCGT AAACCACTTGCTGGTCTATCTCCAGCAGTTACAGAAGGCCTGAGATGGCGCEST: gi|67578563|gb|BJ950730.1|BJ950730
genomic: GCAAGATTTGTGAGCTCCAGGGCGCTGCGATGTCGCGGTACTTCCTTCGTgtaagtgaac ... tgtggtacagAAACCACTTGCTGGTCTATCTCCAGCAGTTACAGAAGGCCTGAGATGGCGC
EST: AGATTTGTGAGCTCCAGGGCGCTGCGATGTCGCGGTACTTCCTTCGT AAACCACTTGCTGGTCTATCTCCAGCAGTTACAGAAGGCCTGAGATGGCGCEST: gi|208347748|gb|DC912923.1|DC912923
genomic: AGATTTGTGAGCTCCAGGGCGCTGCGATGTCGCGGTACTTCCTTCGTgtaagtgaac ... tgtggtacagAAACCACTTGCTGGTCTATCTCCAGCAGTTACAGAAGGCCTGAGATGGCGC
EST: GCAAGATTTGTGAGCTCCAGGGCGCTGCGATGTCGCGGTACTTCCTTCGT AAACCACTTGCTGGTCTATCTCCAGCAGTTACAGAAGGCCTGAGATGGCGCEST: gi|208394250|gb|DC933918.1|DC933918
genomic: GCAAGATTTGTGAGCTCCAGGGCGCTGCGATGTCGCGGTACTTCCTTCGTgtaagtgaac ... tgtggtacagAAACCACTTGCTGGTCTATCTCCAGCAGTTACAGAAGGCCTGAGATGGCGC
EST: GCAAGATTTGTGAGCTCCAGGGCGCTGCGATGTCGCGGTACTTCCTTCGT AAACCACTTGCTGGTCTATCTCCAGCAGTTACAGAAGGCCTGAGATGGCGCEST: gi|22492604|gb|BU052527.1|BU052527
genomic: GCAAGATTTGTGAGCTCCAGGGCGCTGCGATGTCGCGGTACTTCCTTCGTgtaagtgaac ... tgtggtacagAAACCACTTGCTGGTCTATCTCCAGCAGTTACAGAAGGCCTGAGATGGCGC
EST: GCAAGATTTGTGAGCTCCAGGGCGCTGCGATGTCGCGGTACTTCCTTCGT AAACCACTTGCTGGTCTATCTCCAGCAGTTACAGAAGGCCTGAGATGGCGC
genomic: GCAAGATTTGTGAGCTCCAGGGCGCTGCGATGTCGCGGTACTTCCTTCGTgtaagtgaac ... tgtggtacagAAACCACTTGCTGGTCTATCTCCAGCAGTTACAGAAGGCCTGAGATGGCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATCGTTGCGTCCAGTTTTACAAGTGCAAGATTTGTGAGCTCCAGGGCGCTGCGATGTCGCGGTACTTCCTTCGTgtaagtgaactgctccagtagctgcacatgtgttgagattttttccgggagctatttaggtttggaattggttgagtttgattagggctaaaccctaaag
- - - - - - - - - - - - - GCAAGA