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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGCATCCACATAGGCCAGGCCGGTATTCAGGTCGGGAATGCGTGCTGGGAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggattgggtggtgcaggggatggggatgggcttgtgatgcttagcagttccggcgggaccgtagcccggtgcccaggggttggtagcggggagg...

Basic information

species Physcomitrella patens
transcript PP1S341_23V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S341_23V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os03g11970.1 (Oryza sativa), 5'ss of exon 1
TCAGCATCCACATAGGCCAGGCCGGTATTCAGGTCGGGAATGCGTGCTGGGAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggattgggtggtgcaggggatggggatgggcttgtgatgcttagcagttccggcgggaccgt-----agcccggtgcccaggggttggtagcggggagg-
| |||||||||||||| ||||| || || ||||| |||||| | |||||||| || ||||| || |||||||| || ||||| || || | |||||| |||| | |    | | |    ||     ||    |  || | |  ||||   |  ||||  |   |   |     |  | | |   | |  | ||||   |    |  
TAAGCATCCACATAGGGCAGGCGGGCATCCAGGTGGGGAATTCTTGCTGGGAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAGgttctt---ctcgat--cccaattcttgctcgtctgcatctcttgct-gtcttttcctacttaattttgtgaaattctgatattcggatgatggttttgtcctgtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67703938|gb|BJ964171.1|BJ964171
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|162167933|gb|FC344871.1|FC344871
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|208364495|gb|DC930885.1|DC930885
EST:     GAGCTGTACTGTCTGGAGCATGGNATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|100430722|gb|BY978363.1|BY978363
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|67704404|gb|BJ964637.1|BJ964637
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|208376274|gb|DC940972.1|DC940972
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|100385210|gb|BY950802.1|BY950802
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|18331875|gb|BJ163887.1|BJ163887
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|100390448|gb|BY952856.1|BY952856
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|100447498|gb|CJ971797.1|CJ971797
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|162153183|gb|FC329589.1|FC329589
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|208367360|gb|DC939876.1|DC939876
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|18332205|gb|BJ164218.1|BJ164218
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|18324871|gb|BJ156866.1|BJ156866
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|18353802|gb|BJ185857.1|BJ185857
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTA
EST: gi|100416761|gb|BY993074.1|BY993074
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|162197748|gb|FC374998.1|FC374998
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|18366573|gb|BJ198652.1|BJ198652
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|100355494|gb|BY945962.1|BY945962
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|100386745|gb|BY970286.1|BY970286
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|18358529|gb|BJ190588.1|BJ190588
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|100384352|gb|BY969483.1|BY969483
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|18360637|gb|BJ192700.1|BJ192700
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|162229157|gb|FC404516.1|FC404516
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|18331654|gb|BJ163665.1|BJ163665
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCAACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|100400971|gb|BY973035.1|BY973035
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|162186501|gb|FC363265.1|FC363265
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|100378281|gb|BY949772.1|BY949772
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|162159253|gb|FC335106.1|FC335106
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|100434951|gb|BY960886.1|BY960886
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|208359573|gb|DC934588.1|DC934588
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|100398871|gb|BY990557.1|BY990557
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|100371212|gb|BY985993.1|BY985993
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|100411179|gb|BY974509.1|BY974509
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|100391720|gb|BY989519.1|BY989519
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|208361994|gb|DC943463.1|DC943463
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|208372920|gb|DC940551.1|DC940551
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCANCCCGATGGTCGCATGCCAAG                         CGACACGACGGNANGAGGTGGCGACGATGCGTTCAACACATTTTTTANCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|100378611|gb|BY968689.1|BY968689
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|208389619|gb|DC933663.1|DC933663
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|162174343|gb|FC350414.1|FC350414
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|67709298|gb|BJ965114.1|BJ965114
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|208364662|gb|DC939429.1|DC939429
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|100420027|gb|BY975938.1|BY975938
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|18352384|gb|BJ184438.1|BJ184438
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|67703103|gb|BJ963336.1|BJ963336
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|67573333|gb|BJ946157.1|BJ946157
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|67569845|gb|BJ942669.1|BJ942669
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|67709999|gb|BJ965812.1|BJ965812
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|100367015|gb|BY948325.1|BY948325
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|18353132|gb|BJ185187.1|BJ185187
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|100432236|gb|BY960383.1|BY960383
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|100429732|gb|BY959710.1|BY959710
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|100376077|gb|BY968297.1|BY968297
EST:     TAGCTGTACTGGCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGT
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGT
EST: gi|162162283|gb|FC338065.1|FC338065
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|100422216|gb|BY957914.1|BY957914
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|162170569|gb|FC347689.1|FC347689
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|100430362|gb|BY959831.1|BY959831
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|208345518|gb|DC909208.1|DC909208
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|162195647|gb|FC370310.1|FC370310
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|67716511|gb|BJ966771.1|BJ966771
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|100411792|gb|BY992343.1|BY992343
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|100390005|gb|BY989085.1|BY989085
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|100445719|gb|CJ970018.1|CJ970018
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|100443679|gb|BY963776.1|BY963776
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|100367344|gb|BY966942.1|BY966942
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
EST: gi|67573330|gb|BJ946154.1|BJ946154
EST:     GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAG                         CGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA
genomic: GAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggat ... gggtttgcagCGACACGACGGTAGGAGGTGGCGACGATGCGTTCAACACATTTTTTAGCGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAGCATCCACATAGGCCAGGCCGGTATTCAGGTCGGGAATGCGTGCTGGGAGCTGTACTGTCTGGAGCATGGGATTCAGCCCGATGGTCGCATGCCAAGgtacgtggattgggtggtgcaggggatggggatgggcttgtgatgcttagcagttccggcgggaccgtagcccggtgcccaggggttggtagcggggagg

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