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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGCCACCCATCATCGTCGTAGGGTTGGTGGCTTACATCAAGACTCCTCGCGGGTTGAGGTCGTTGAACACGGTGTGGGCTCAGCACCTGAGCGACGAGgtgaagaggaggttctacaagaactggtacaagtcgaagaagaaagccttctctaagtacag

Basic information

species Physcomitrella patens
transcript PP1S330_36V6.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S330_36V6.2 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EDP06420 (Chlamydomonas reinhardtii), 5'ss of exon 3
GACGCCACCCATCATCGTCGTAGGGTTGGTGGCTTACATCAAGACTCCTCGCGGGTTGAGGTCGTTGAACACGGTGTGGGCTCAGCACCTGAGCGACGAGgtgaagaggaggttc--tacaagaactggtacaagtcgaa------gaagaaagccttctctaagta--cag---------------------------------------
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-----------TGGTCGTGGTCGGTGCGGTCGGCTACGTGAAGACCCCCCGCGGTCTGCGCTCGCTGAACACCGTCTGGGCTGAGCACCTGAGCGAGGAGGTGAAGCGCAGgtgcgtttcatgacctagcgtgtgcaggactcttggggtggagtctcttgggggtaggcaggggtgggggaggcgtgggtggggcgcgcagcaatgcgtc