1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTACACGCCCCAGCCTTACGATGGGCCCAAGGCCGACGAGATTCTGGCAAAGCGGAAGAAGTTTCTCAACCCCGCCCTCTTCTTATACTACAAGAAGCATgtaggtttagacactctcttgaataatgcaatgcgttacttcattttgtataaatggtgtttcaggtgctgcaaattaggtttctgcaggggtagcctcttgtgggagagagacggtccggctctgatcagagtttatactgatggtagaagcaccattgacgtggcattgcag
species | Physcomitrella patens |
transcript | PP1S32_198V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGCGGAAGAAGTTTCTCAACCCCGCCCTCTTCTTATACTACAAGAAGCAT CTGAATATTGTGGAAGGAAAGATGCAGTACCTGTTTGATGAGAGTGGTCGGEST: gi|18374422|gb|BJ206000.1|BJ206000
genomic: AGCGGAAGAAGTTTCTCAACCCCGCCCTCTTCTTATACTACAAGAAGCATgtaggtttag ... ggcattgcagCTGAATATTGTGGAAGGAAAGATGCAGTACCTGTTTGATGAGAGTGGTCGG
EST: AGCGGAAGAAGTTTCTCAACCCCGCCCTCTTCTTATACTACAAGAAGCAT CTGAATATTGTGGAAGGAAAGATGCAGTACCTGTTTGATGAGAGTGGTCGGEST: gi|162186137|gb|FC361341.1|FC361341
genomic: AGCGGAAGAAGTTTCTCAACCCCGCCCTCTTCTTATACTACAAGAAGCATgtaggtttag ... ggcattgcagCTGAATATTGTGGAAGGAAAGATGCAGTACCTGTTTGATGAGAGTGGTCGG
EST: AGCGGAAGAAGTTTCTCAACCCCGCCCTCTTCTTATACTACAAGAAGCAT CTGAATATTGTGGAAGGAAAGATGCAGTACCTGTTTGATGAGAGTGGTCGGEST: gi|18374757|gb|BJ206335.1|BJ206335
genomic: AGCGGAAGAAGTTTCTCAACCCCGCCCTCTTCTTATACTACAAGAAGCATgtaggtttag ... ggcattgcagCTGAATATTGTGGAAGGAAAGATGCAGTACCTGTTTGATGAGAGTGGTCGG
EST: AGCGGAAGAAGTTTCTCAACCCCGCCCTCTTCTTATACTACAAGAAGCAT CTGAATATTGTGGAAGGAAAGATGCAGTACCTGTTTGATGAGAGTGGTCGG
genomic: AGCGGAAGAAGTTTCTCAACCCCGCCCTCTTCTTATACTACAAGAAGCATgtaggtttag ... ggcattgcagCTGAATATTGTGGAAGGAAAGATGCAGTACCTGTTTGATGAGAGTGGTCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTACACGCCCCAGCCTTACGATGGGCCCAAGGCCGACGAGATTCTGGCAAAGCGGAAGAAGTTTCTCAACCCCGCCCTCTTCTTATACTACAAGAAGCATgtaggtttagacactctcttgaataatgcaatgcgttacttcattttgtataaatggtgtttcaggtgctgcaaattaggtttctgcaggggtagcctcttgtgggagagagacggtccggctctgatcagagtttatactgatggtagaagcaccattgacgtggcattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC