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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCATGGCGTGTCGGAGGCAGAGTCCTAGCAAAGCGGAGCCAGGAGGAGGGAGACGATCCATCAACGCCGCTCTCGCGCCTACCGATTAAACGCCAATAGgtagtgcttgcctttgattgagggatgaatctgcgtagctgtcggtgttttggaattgatctcctcggattcatttttggttctggagccggttcttgag...

Basic information

species Physcomitrella patens
transcript PP1S32_143V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18353939|gb|BJ185994.1|BJ185994
EST:     GAGACGATCCATCAACGCCGCTCTCGCGCCTACCGATTAAACGCCAATAG                         GGTGTCGTGTGTGGTGGAGGATTGGCGTTGAGCGATTGAATACCTGAGGGG
genomic: GAGACGATCCATCAACGCCGCTCTCGCGCCTACCGATTAAACGCCAATAGgtagtgcttg ... gttttcggagGGTGTCGTGTGTGGTGGAGGATTGGCGTTGAGCGATTGAATACCTGAGGGG
EST: gi|18349429|gb|BJ181478.1|BJ181478
EST:     GAGACGATCCATCAACGCCGCTCTCGCGCCTACCGATTAAACGCCAATAG                         GGTGTCGTGTGTGGTGGAGGATTGGCGTTGAGCGATTGAATACCTGAGGGG
genomic: GAGACGATCCATCAACGCCGCTCTCGCGCCTACCGATTAAACGCCAATAGgtagtgcttg ... gttttcggagGGTGTCGTGTGTGGTGGAGGATTGGCGTTGAGCGATTGAATACCTGAGGGG