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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTTGCCTCGCGTAGTCCGATTCTACTCGCTTTTTCTCAACATTAGTGTGTTTATTTGTGGTACTTGGTCATGTCCACTCTCGAAATCGAAGCGCGTGAgtaagtatctcgatttctttcctcgctctaggttttagattagtctgccttttgttgcttgcgcgtctctgcccttgcggattctggatatcattctctt...

Basic information

species Physcomitrella patens
transcript PP1S31_68V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208378663|gb|DC903694.1|DC903694
EST:     GTTTATTTGTGGTACTTGGTCATGTCCACTCTCGAAATCGAAGCGCGTGA                         TGTCATTAAGATAGTGCTGCAGTTCTGTAAAGAGAACTCATTGCAGCAGAC
genomic: GTTTATTTGTGGTACTTGGTCATGTCCACTCTCGAAATCGAAGCGCGTGAgtaagtatct ... gactgtgcagTGTCATTAAGATAGTGCTGCAGTTCTGTAAAGAGAACTCATTGCAGCAGAC
EST: gi|18362895|gb|BJ194967.1|BJ194967
EST:     GTTTATTTGTGGTACTTGGTCATGTCCACTCTCGAAATCGAAGCGCGTGA                         TGTCATTAAGATAGTGCTGCAGTTCTGTAAAGAGAACTCATTGCAGCAGAC
genomic: GTTTATTTGTGGTACTTGGTCATGTCCACTCTCGAAATCGAAGCGCGTGAgtaagtatct ... gactgtgcagTGTCATTAAGATAGTGCTGCAGTTCTGTAAAGAGAACTCATTGCAGCAGAC
EST: gi|67717592|gb|BJ967851.1|BJ967851
EST:     GTTTATTTGTGGTACTTGGTCATGTCCACTCTCGAAATCGAAGCGCGTGA                         TGTCATTAAGATAGTGCTGCAGTTCTGTAAAGAGAACTCATTGCAGCAGAC
genomic: GTTTATTTGTGGTACTTGGTCATGTCCACTCTCGAAATCGAAGCGCGTGAgtaagtatct ... gactgtgcagTGTCATTAAGATAGTGCTGCAGTTCTGTAAAGAGAACTCATTGCAGCAGAC
EST: gi|208379508|gb|DC911119.1|DC911119
EST:     GTTTATTTGTGGTACTTGGTCATGTCCACTCTCGAAATCNAANCGCGTGA                         TGTCATTAANATAGTGCTGCANTTCTGTAAAGAGAACTCATTGCAGCAGAC
genomic: GTTTATTTGTGGTACTTGGTCATGTCCACTCTCGAAATCGAAGCGCGTGAgtaagtatct ... gactgtgcagTGTCATTAAGATAGTGCTGCAGTTCTGTAAAGAGAACTCATTGCAGCAGAC
EST: gi|18352925|gb|BJ184980.1|BJ184980
EST:     GTTTATTTGTGGTACTTGGTCATGTCCACTCTCGAAATCGAAGCGCGTGA                         TGTCATTAAGATAGTGCTGCAGTTCTGTAAAGAGAACTCATTGCAGCAGAC
genomic: GTTTATTTGTGGTACTTGGTCATGTCCACTCTCGAAATCGAAGCGCGTGAgtaagtatct ... gactgtgcagTGTCATTAAGATAGTGCTGCAGTTCTGTAAAGAGAACTCATTGCAGCAGAC
EST: gi|67573598|gb|BJ946422.1|BJ946422
EST:     GTTTATTTGTGGTACTTGGTCATGTCCACTCTCGAAATCGAAGCGCGTGA                         TGTCATTAAGATAGTGCTGCAGTTCTGTAAAGAGAACTCATTGCAGCAGAC
genomic: GTTTATTTGTGGTACTTGGTCATGTCCACTCTCGAAATCGAAGCGCGTGAgtaagtatct ... gactgtgcagTGTCATTAAGATAGTGCTGCAGTTCTGTAAAGAGAACTCATTGCAGCAGAC
EST: gi|18356245|gb|BJ188304.1|BJ188304
EST:     GTTTATTTGTGGTACTTGGTCATGTCCACTCTCGAAATCGAAGCGCGTGA                         TGTCATTAAGATAGTGCTGCAGTTCTGTAAAGAGAACTCATTGCAGCAGAC
genomic: GTTTATTTGTGGTACTTGGTCATGTCCACTCTCGAAATCGAAGCGCGTGAgtaagtatct ... gactgtgcagTGTCATTAAGATAGTGCTGCAGTTCTGTAAAGAGAACTCATTGCAGCAGAC
EST: gi|100450837|gb|CJ974464.1|CJ974464
EST:     GTTTATTTGTGGTACTTGGTCATGTCCACTCTCGAAATCGAAGCGCGTGA                         TGTCATTAAGATAGTGCTGCAGTTCTGTAAAGAGAACTCATTGCAGCAGAC
genomic: GTTTATTTGTGGTACTTGGTCATGTCCACTCTCGAAATCGAAGCGCGTGAgtaagtatct ... gactgtgcagTGTCATTAAGATAGTGCTGCAGTTCTGTAAAGAGAACTCATTGCAGCAGAC
EST: gi|100431243|gb|BY960099.1|BY960099
EST:     GTTTATTTGTGGTACTTGGTCATGTCCACTCTCGAAATCGAAGCGCGTGA                         TGTCATTAAGATAGTGCTGCAGTTCTGTAAAGAGAACTCATTGCAGCAGAC
genomic: GTTTATTTGTGGTACTTGGTCATGTCCACTCTCGAAATCGAAGCGCGTGAgtaagtatct ... gactgtgcagTGTCATTAAGATAGTGCTGCAGTTCTGTAAAGAGAACTCATTGCAGCAGAC
EST: gi|18350111|gb|BJ182162.1|BJ182162
EST:     GTTTATTTGTGGTACTTGGTCATGTCCACTCTCGAAATCGAAGCGCGTGA                         TGTCATTAAGATAGTGCTGCAGTTCTGTAAAGAGAACTCATTGCAGCAGAC
genomic: GTTTATTTGTGGTACTTGGTCATGTCCACTCTCGAAATCGAAGCGCGTGAgtaagtatct ... gactgtgcagTGTCATTAAGATAGTGCTGCAGTTCTGTAAAGAGAACTCATTGCAGCAGAC
EST: gi|100407287|gb|BY974097.1|BY974097
EST:     GTTTATTTGTGGTACTTGGTCATGTCCACTCTCGAAATCGAAGCGC-TG-                         T--CATTAAGATAGTGCTGCAGTTCTGTAAAGAGAACTCATTGCAGCAGAC
genomic: GTTTATTTGTGGTACTTGGTCATGTCCACTCTCGAAATCGAAGCGCGTGAgtaagtatct ... gactgtgcagTGTCATTAAGATAGTGCTGCAGTTCTGTAAAGAGAACTCATTGCAGCAGAC