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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCGTAGTTTGGAATACTCCGGAATTCGCACAGGAATTGTTGCCCAAGTACTTCAAGCACAATAATTTTTCCAGCTTCGTCCGGCAACTCAACACTTACgtaagtcattgtctttctctttaagtcttgctcctttatctcaccctcctttggtgacggtggtaatggcgtcagggtatcttgcaggtactgtttgtac...

Basic information

species Physcomitrella patens
transcript PP1S31_388V6.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S31_388V6.2 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
CTTCGTAGTTTGGAATACTCCGGAATTCGCACAGGAATTGTTGCCCAAGTACTTCAAGCACAATAATTTTTCCAGCTTCGTCCGGCAACTCAACACTTACgtaagtcattgtc----tttctctttaagtcttgctcctttatctcaccc---tcctttggtgacggtggtaatggcgtcagggtatcttgcaggtactgtttgtac
|||| | || |||||  | ||||| || || | ||| ||| | |||||  ||||||||||||| ||||| |||||||| || || || |||||||| || |||||||   | |    || |      |  |||||| | |    |||           |||  |  | || ||||  |   |||   |   | || |          
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgctacctaggttcaaggaggggtgctgggaagagggggaatgcggctggggcggccgccggggagcc-------

upper sequence: PP1S31_388V6.2 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ28302 (Selaginella moellendorffii), 5'ss of exon 1
CTTCGTAGTTTGGAATACTCCGGAATTCGCACAGGAATTGTTGCCCAAGTACTTCAAGCACAATAATTTTTCCAGCTTCGTCCGGCAACTCAACACTTACgtaagtcattgtctttctctttaagtc--ttgctcctttatctcaccctcctttggtgacggtggtaatggcgtcagggtatcttgcaggtactgtttgtac
|||||| || |||||  | | ||| ||| | | ||| ||| |||||||||||||||||||||| || || ||||||||||||||||| |||||||| || || |||  |      ||||       |  ||  ||| || |  || | |   || |    |    ||   ||| ||  ||    | |||             
CTTCGTGGTGTGGAACCCGCTGGATTTCTCGCGGGATTTGCTGCCCAAGTACTTCAAGCACAACAACTTCTCCAGCTTCGTCCGGCAGCTCAACACCTATgtgagttctctctcctctcccctgcgcaattcttccatttttccagctttgatttgatctgactttaccagcg-cactgtgctctacag-------------

upper sequence: PP1S31_388V6.2 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ20325 (Selaginella moellendorffii), 5'ss of exon 1
CTTCGTAGTTTGGAATACTCCGGAATTCGCACAGGAATTGTTGCCCAAGTACTTCAAGCACAATAATTTTTCCAGCTTCGTCCGGCAACTCAACACTTACgtaagtcattgtctttctctttaagtc--ttgctcctttatctcaccctcctttggtgacggtggtaatggcgtcagggtatcttgcaggtactgtttgtac
|||||| || |||||  | | ||| ||| | | ||| ||| |||||||||||||||||||||| || || ||||||||||||||||| |||||||| || || |||  |      ||||       |  ||  ||| || |  || | |   ||      |    ||   ||| ||  ||    | |||             
CTTCGTGGTGTGGAACCCGCTGGATTTCTCGCGGGATTTGCTGCCCAAGTACTTCAAGCACAACAACTTCTCCAGCTTCGTCCGGCAGCTCAACACCTATgtgagttctctctcctctcccctgcgcaattcttccatttttccagctttgattttatctgactttaccagcg-cactgtgctctacag-------------