1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGGGCCTGGTTACGGATTGGACCAGGAGTGGATTGATACGGTGGAGCGCCGGGCTGCACAGCGGCAGGAGAAGCTTGAAATGGAGCTCAATGGATATAGGgtgtccgtctagccctttctttctggttaacggattttagggttaatcttctagtatttgggaatgacgaaagtgaaatttgtatggccttcttaatcaagtttcttgtatttatttgtgatgtctccttgtgagctaatcaagaatatgcaaggctttttttaacaagttgttttcaacag
species | Physcomitrella patens |
transcript | PP1S31_338V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGGCTGCACAGCGGCAGGAGAAGCTTGAAATGGAGCTCAATGGATATAGG ACAAACCTGATCAAAGAGAGCATTCGAATGGGCTACAATGACCTCGGCGATEST: gi|162169510|gb|FC346074.1|FC346074
genomic: GGGCTGCACAGCGGCAGGAGAAGCTTGAAATGGAGCTCAATGGATATAGGgtgtccgtct ... ttttcaacagACAAACCTGATCAAAGAGAGCATTCGAATGGGCTACAATGACCTCGGCGAT
EST: GGGCTGCACAGCGGCAGGAGAAGCTTGAAATGGAGCTCAATGGATATAGG ACAAACCTGATCAAAGAGAGCATTCGAATGGGCTACAATGACCTCGGCGATEST: gi|208348050|gb|DC905373.1|DC905373
genomic: GGGCTGCACAGCGGCAGGAGAAGCTTGAAATGGAGCTCAATGGATATAGGgtgtccgtct ... ttttcaacagACAAACCTGATCAAAGAGAGCATTCGAATGGGCTACAATGACCTCGGCGAT
EST: GGGCTGCACAGCGGCAGGAGAAGCTTGAAATGGAGCTCAATGGATATAGG ACAAACCTGATCAAAGAGAGCATTCGAATGGGCTACAATGACCTCGGCGATEST: gi|100404512|gb|BY973615.1|BY973615
genomic: GGGCTGCACAGCGGCAGGAGAAGCTTGAAATGGAGCTCAATGGATATAGGgtgtccgtct ... ttttcaacagACAAACCTGATCAAAGAGAGCATTCGAATGGGCTACAATGACCTCGGCGAT
EST: GGCTGCACAGCGGCAGGAGAAGCTTNGAA-TGGAGCTCAATGGATATAGG GEST: gi|100404512|gb|BY973615.1|BY973615
genomic: GGCTGCACAGCGGCAGGAGAAGCTT-GAAATGGAGCTCAATGGATATAGGgtgtccgtct ... ttttcaacag-
EST: GGCTGCACAGCGGCAGGAGAAGCTTNGAA-TGGAGCTCAATGGATATAGG GEST: gi|67717537|gb|BJ967796.1|BJ967796
genomic: GGCTGCACAGCGGCAGGAGAAGCTT-GAAATGGAGCTCAATGGATATAGGgtgtccgtct ... ttttcaacag-
EST: GGGCTGCACAGCGGCAGGAGAAGCTTGAAATGGAGCTCAATGGATATAGG ACAAACCTGATCAAAGAGAGCATTCGAATGGGCTACAATGACCTCGGCGATEST: gi|100438439|gb|BY979957.1|BY979957
genomic: GGGCTGCACAGCGGCAGGAGAAGCTTGAAATGGAGCTCAATGGATATAGGgtgtccgtct ... ttttcaacagACAAACCTGATCAAAGAGAGCATTCGAATGGGCTACAATGACCTCGGCGAT
EST: GGGCTGCACAGCGGCAGGAGAAGCTTGAAATGGAGCTCAATGGATATAGG ACAAACCTGATCAAAGAGAGCATTCGAATGGGCTACAATGACCTCGGCGATEST: gi|67719857|gb|BJ970116.1|BJ970116
genomic: GGGCTGCACAGCGGCAGGAGAAGCTTGAAATGGAGCTCAATGGATATAGGgtgtccgtct ... ttttcaacagACAAACCTGATCAAAGAGAGCATTCGAATGGGCTACAATGACCTCGGCGAT
EST: GGGCTGCACAGCGGCAGGAGAAGCTTGAAATGGAGCTCAATGGATATAGG ACAAACCTGATCAAAGAGAGCATTCGAATGGGCTACAATGACCTCGGCGATEST: gi|18365655|gb|BJ197732.1|BJ197732
genomic: GGGCTGCACAGCGGCAGGAGAAGCTTGAAATGGAGCTCAATGGATATAGGgtgtccgtct ... ttttcaacagACAAACCTGATCAAAGAGAGCATTCGAATGGGCTACAATGACCTCGGCGAT
EST: GGGCTGCACAGCGGCAGGAGAAGCTTGAAATGGAGCTCAATGGATATAGG ACAAACCTGATCAEST: gi|100416138|gb|BY957095.1|BY957095
genomic: GGGCTGCACAGCGGCAGGAGAAGCTTGAAATGGAGCTCAATGGATATAGGgtgtccgtct ... ttttcaacagACAAACCTGATCA
EST: GGGCTGCACAGCGCCAGGAGAAGCTTGAAATGGAGCTCAATGGATATAGG ACAAACCTGATCAAAGAGAGCATTCGAATGAGCTACAATGACCTCEST: gi|19789755|gb|BQ041491.1|BQ041491
genomic: GGGCTGCACAGCGGCAGGAGAAGCTTGAAATGGAGCTCAATGGATATAGGgtgtccgtct ... ttttcaacagACAAACCTGATCAAAGAGAGCATTCGAATGGGCTACAATGACCTC
EST: GGGCTGCACAGCGGCAGGAGAAGCTTGAAATGGAGCTCAATGGATATAGG ACAAACCTGATCAAAGAGAGCATTCGAATGGGCTACAATGACCTCGGCGATEST: gi|18357096|gb|BJ189155.1|BJ189155
genomic: GGGCTGCACAGCGGCAGGAGAAGCTTGAAATGGAGCTCAATGGATATAGGgtgtccgtct ... ttttcaacagACAAACCTGATCAAAGAGAGCATTCGAATGGGCTACAATGACCTCGGCGAT
EST: GGGCTGCACAGCGGCAGGAGAAGCTTGAAATGGAGCTCAATGGATATAGG ACAAACCTGATCAAAGAGAGCATTCGAATGGGCTACAATGACCTCGGCGAT
genomic: GGGCTGCACAGCGGCAGGAGAAGCTTGAAATGGAGCTCAATGGATATAGGgtgtccgtct ... ttttcaacagACAAACCTGATCAAAGAGAGCATTCGAATGGGCTACAATGACCTCGGCGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGCCTGGTTACGGATTGGACCAGGAGTGGATTGATACGGTGGAGCGCCGGGCTGCACAGCGGCAGGAGAAGCTTGAAATGGAGCTCAATGGATATAGGgtgtccgtctagccctttctttctggttaacggattttagggttaatcttctagtatttgggaatgacgaaagtgaaatttgtatggccttcttaatcaagtttcttgtatttatttgtgatgtctccttgtgagctaatcaagaatatgcaaggctttttttaacaagttgttttcaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA