1 5' 3' | 2 5' 3' | 3 5' 3' |
AGATGCCGTAGTCTTGCTGCAAGAGATGACACAAGCTGGAATTCAGCCAAACATCGTGACTTACAACTCACTCATCGATGCGTACGGGAGATATGGCCAAgtatgtgtaatatctgcatgagttttaaatcttcgctgtgtttcttagtttttagccagtaggtaattcttccttgaaattgttcagatatgtgtctggtgtgggcttcattcacttggaaggttgacttcgatgtatagtgtaattaacatgtgggatatctgcag
species | Physcomitrella patens |
transcript | PP1S307_58V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACATCGTGACTTACAACTCACTCATCGATGCGTACGGGAGATATGGCCAA GCTGACAAACTGGAAGCTGTGAAGGCGAACATGCCGAACTCCGTTCAAAAAEST: gi|100389473|gb|BY988951.1|BY988951
genomic: ACATCGTGACTTACAACTCACTCATCGATGCGTACGGGAGATATGGCCAAgtatgtgtaa ... atatctgcagGCTGACAAACTGGAAGCTGTGAAGGCGAACATGCCGAACTCCGTTCAAAAA
EST: ACATCGTGACTTACAACTCACTCATCGATGCGTACGGGAGATATGGCCAA GCTGACAAACTGGAAGCTGTGAAGGCGAACATGCCGAACTCCGTTCAAAAAEST: gi|162256632|gb|FC433150.1|FC433150
genomic: ACATCGTGACTTACAACTCACTCATCGATGCGTACGGGAGATATGGCCAAgtatgtgtaa ... atatctgcagGCTGACAAACTGGAAGCTGTGAAGGCGAACATGCCGAACTCCGTTCAAAAA
EST: CATCGATGCGTACGGGAGATATGGCCAA GCTGACAAACTGGAAGCTGTGAAGGCGAACATGCCGAACTCCGTTCAAAAAEST: gi|162256465|gb|FC432496.1|FC432496
genomic: CATCGATGCGTACGGGAGATATGGCCAAgtatgtgtaa ... atatctgcagGCTGACAAACTGGAAGCTGTGAAGGCGAACATGCCGAACTCCGTTCAAAAA
EST: ACATCGTGACTTACAACTCACTCATCGATGCGTACGGGAGATATGGCCAA GCTGACAAACTGGAAGCTGTGAAGGCGAACATGCCGAACTCCGTTCAAAAAEST: gi|162214317|gb|FC390036.1|FC390036
genomic: ACATCGTGACTTACAACTCACTCATCGATGCGTACGGGAGATATGGCCAAgtatgtgtaa ... atatctgcagGCTGACAAACTGGAAGCTGTGAAGGCGAACATGCCGAACTCCGTTCAAAAA
EST: ACATCGTGACTTACAACTCACTCATCGATGCGTACGGGAGATATGGCCAA GCTGACAAACTGGAAGCTGTGAAGGCGAACATGCCGAACTCCGTTCAAAAA
genomic: ACATCGTGACTTACAACTCACTCATCGATGCGTACGGGAGATATGGCCAAgtatgtgtaa ... atatctgcagGCTGACAAACTGGAAGCTGTGAAGGCGAACATGCCGAACTCCGTTCAAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATGCCGTAGTCTTGCTGCAAGAGATGACACAAGCTGGAATTCAGCCAAACATCGTGACTTACAACTCACTCATCGATGCGTACGGGAGATATGGCCAAgtatgtgtaatatctgcatgagttttaaatcttcgctgtgtttcttagtttttagccagtaggtaattcttccttgaaattgttcagatatgtgtctggtgtgggcttcattcacttggaaggttgacttcgatgtatagtgtaattaacatgtgggatatctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT