1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTGGGTTGCGGCGTCGCTTATTGAATCTAACGTGTGGAGTACGCCGCCGACGCCATTGATGGACCTCAGTACGCCTGTTCCTCGCACCCGCTCCATTCAGgttagggtctatgttggtgttggttttgcaaaatactgggctcatatatatatatatatatatatgatcatatatatatatatataagggatcataagaagaagttgtgtagggattgtacgtgaaagtgcaagagatgcgtactgagaggtggtatccacag
species | Physcomitrella patens |
transcript | PP1S303_59V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCCATTGATGGACCTCAGTACGCCTGTTCCTCGCACCCGCTCCATTCAG GTTCCACATGTGCGGCANCTTTGCAACTGGGACTGCGGGTTGGCATGTGTCEST: gi|100388678|gb|BY970826.1|BY970826
genomic: CGCCATTGATGGACCTCAGTACGCCTGTTCCTCGCACCCGCTCCATTCAGgttagggtct ... gtatccacagGTTCCACATGTGCGGCAGCTTTGCAACTGGGACTGCGGGTTGGCATGTGTC
EST: CGCCATTGATGGACCTCAGTACGCCTGTTCCTCGCACCCGCTCCATTCAG GTTCCACATGTGCGGCAGCTTTGCAACTGGGACTGCGGGTTGGCATGTGTCEST: gi|100398688|gb|BY990466.1|BY990466
genomic: CGCCATTGATGGACCTCAGTACGCCTGTTCCTCGCACCCGCTCCATTCAGgttagggtct ... gtatccacagGTTCCACATGTGCGGCAGCTTTGCAACTGGGACTGCGGGTTGGCATGTGTC
EST: CGCCATTGATGGACCTCAGTACGCCTGTTCCTCGCACCCGCTCCATTCAG GTTCCACATGTGCGGCAGCTTTGCAACTGGGACTGCGGGTTGGCATGTGTC
genomic: CGCCATTGATGGACCTCAGTACGCCTGTTCCTCGCACCCGCTCCATTCAGgttagggtct ... gtatccacagGTTCCACATGTGCGGCAGCTTTGCAACTGGGACTGCGGGTTGGCATGTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGGTTGCGGCGTCGCTTATTGAATCTAACGTGTGGAGTACGCCGCCGACGCCATTGATGGACCTCAGTACGCCTGTTCCTCGCACCCGCTCCATTCAGgttagggtctatgttggtgttggttttgcaaaatactgggctcatatatatatatatatatatatgatcatatatatatatatataagggatcataagaagaagttgtgtagggattgtacgtgaaagtgcaagagatgcgtactgagaggtggtatccacag
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