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GCTACTGCTGCTGGTTCCGATGATGCGCCATTGCCCGCGCTTGAGTGGAAATTCTCTCAGGTTTTTGGAGAGCGCGCCATCGGAGAAGAAGTGCAAGAAGgtctgtggcttgatcgccttttgttcgtagtttagagggtcctagagaattacatacttcatggtgaagcgtttggtttctcttgtttttgtttagtcct...
species | Physcomitrella patens |
transcript | PP1S301_53V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATTCTCTCAGGTTTTTGGAGAGCGCGCCATCGGAGAAGAAGTGCAAGAAG TTGACATTATCTCGGCCATTGAGTTCGATAAAACTGGAGAGCATTTGGCAAEST: gi|100404937|gb|BY991356.1|BY991356
genomic: ATTCTCTCAGGTTTTTGGAGAGCGCGCCATCGGAGAAGAAGTGCAAGAAGgtctgtggct ... atgaatgcagTTGACATTATCTCGGCCATTGAGTTCGATAAAACTGGAGAGCATTTGGCAA
EST: ATTCTCTCAGGTTTTTGGAGAGCGCGCCATCGGAGAAGAAGTGCAAGAAG TTGACATTATCTCGGCCATTGAGTTCGATAAAACTGGAGAGCATTTGGCAAEST: gi|100446612|gb|CJ970911.1|CJ970911
genomic: ATTCTCTCAGGTTTTTGGAGAGCGCGCCATCGGAGAAGAAGTGCAAGAAGgtctgtggct ... atgaatgcagTTGACATTATCTCGGCCATTGAGTTCGATAAAACTGGAGAGCATTTGGCAA
EST: ATTCTCTCAGGTTTTTGGAGAGCGCGCCATCGGAGAAGAAGTGCAAGAAG TTGACATTATCTCGGCCATTGAGTTCGATAAAACTGGAGAGCATTTGGCAAEST: gi|162155365|gb|FC331979.1|FC331979
genomic: ATTCTCTCAGGTTTTTGGAGAGCGCGCCATCGGAGAAGAAGTGCAAGAAGgtctgtggct ... atgaatgcagTTGACATTATCTCGGCCATTGAGTTCGATAAAACTGGAGAGCATTTGGCAA
EST: ATTCTCTCACGTTTTTGGAGAGCGCGCCATCGGAGAAGAAGTGCAAGAAG TTGACATTATCTCGGCCATTGAGTTCGATAAAACTGGAGAGCATTTGGCAAEST: gi|18347719|gb|BJ179766.1|BJ179766
genomic: ATTCTCTCAGGTTTTTGGAGAGCGCGCCATCGGAGAAGAAGTGCAAGAAGgtctgtggct ... atgaatgcagTTGACATTATCTCGGCCATTGAGTTCGATAAAACTGGAGAGCATTTGGCAA
EST: ATTCTCTCAGGTTTTTGGAGAGCGCGCCATCGGAGAAGAAGTGCAAGAAG TTGACATTATCTCGGCCATTGAGTTCGATAAAACTGGAGAGCATTTGGCAAEST: gi|162152096|gb|FC328686.1|FC328686
genomic: ATTCTCTCAGGTTTTTGGAGAGCGCGCCATCGGAGAAGAAGTGCAAGAAGgtctgtggct ... atgaatgcagTTGACATTATCTCGGCCATTGAGTTCGATAAAACTGGAGAGCATTTGGCAA
EST: ATTCTCTCAGGTTTTTGGAGAGCGCGCCATCGGAGAAGAAGTGCAAGAAG TTGACATTATCTCGGCCATTGAGTTCGATAAAACTGGAGAGCATTTGGCAA
genomic: ATTCTCTCAGGTTTTTGGAGAGCGCGCCATCGGAGAAGAAGTGCAAGAAGgtctgtggct ... atgaatgcagTTGACATTATCTCGGCCATTGAGTTCGATAAAACTGGAGAGCATTTGGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTACTGCTGCTGGTTCCGATGATGCGCCATTGCCCGCGCTTGAGTGGAAATTCTCTCAGGTTTTTGGAGAGCGCGCCATCGGAGAAGAAGTGCAAGAAGgtctgtggcttgatcgccttttgttcgtagtttagagggtcctagagaattacatacttcatggtgaagcgtttggtttctcttgtttttgtttagtcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG