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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTACGGGGAGCTTCCGGTATGCGAATTCGGAAGCTCCGAAGTCTATTGACTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaagatcgtgttttggtaggagctaagtggcttgagatgtgtgtaatcgagggttcgtggtttaagctctcttgggccttaacaattgtggatt...

Basic information

species Physcomitrella patens
transcript PP1S292_39V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100408725|gb|BY974256.1|BY974256
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GAAGCTGCGGGGCTTT
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTT
EST: gi|162241027|gb|FC416658.1|FC416658
EST:     GTCAAGGATCAAGGATCTTGCG                         GAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
genomic: GTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
EST: gi|208378169|gb|DC902642.1|DC902642
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTANAANGTATCAATGCGA
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
EST: gi|208377974|gb|DC906917.1|DC906917
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTANAAGGTATCAATGCGA
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
EST: gi|100354203|gb|BY945759.1|BY945759
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GAAGCTGCTGGGCTTTTTCAGCGG
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGG
EST: gi|67572519|gb|BJ945343.1|BJ945343
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
EST: gi|162256348|gb|FC432358.1|FC432358
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
EST: gi|100385642|gb|BY987707.1|BY987707
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GGAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
EST: gi|100369887|gb|BY967428.1|BY967428
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
EST: gi|100398573|gb|BY972680.1|BY972680
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GGAGCTGCTGGGCTTTTTCAGCNGGT-GGATCCGTAGAAGGTATCAATGCG
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGC-GGTTGGATCCGTAGAAGGTATCAATGCG
EST: gi|100419504|gb|BY957605.1|BY957605
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
EST: gi|67577821|gb|BJ949988.1|BJ949988
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
EST: gi|208352420|gb|DC906189.1|DC906189
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
EST: gi|100386524|gb|BY951320.1|BY951320
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
EST: gi|208399474|gb|DC908471.1|DC908471
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCN                         GAAGCTGCTGGGCTTTTTCANCGGTTGGATCCGTAGAAGGTATCAATGCGA
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
EST: gi|67569171|gb|BJ941995.1|BJ941995
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
EST: gi|162255229|gb|FC431539.1|FC431539
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
EST: gi|100450023|gb|CJ974055.1|CJ974055
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GAAGCTGCTGGGCTTTT-CAGCGGTTGGATCCGTAAAAG-TATCAATGCGA
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
EST: gi|67507893|gb|BJ940769.1|BJ940769
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
EST: gi|100383789|gb|BY969318.1|BY969318
EST:     TGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATTCT-GCG                         GAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCG
genomic: TGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGAT-CTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCG
EST: gi|100402354|gb|BY954794.1|BY954794
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
EST: gi|162244210|gb|FC420966.1|FC420966
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
EST: gi|100355118|gb|BY965013.1|BY965013
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
EST: gi|67569662|gb|BJ942486.1|BJ942486
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
EST: gi|100386821|gb|BY988090.1|BY988090
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
EST: gi|100400530|gb|BY954523.1|BY954523
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
EST: gi|67576031|gb|BJ948855.1|BJ948855
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         NAAGCTGCTGG
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGG
EST: gi|162176978|gb|FC353655.1|FC353655
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
EST: gi|100406077|gb|BY991528.1|BY991528
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
EST: gi|100399480|gb|BY972740.1|BY972740
EST:     CTGGCGGGAGA-GGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGGAGGGATCAATGCGA
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
EST: gi|208378020|gb|DC914383.1|DC914383
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAAAAGGTATCAATGCGA
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
EST: gi|100445355|gb|BY982984.1|BY982984
EST:     CTGGCGGGAGAAGGGTGCTGTCATTTCTGTCAGGGATCAAGGATCTTGCG                         GGAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAAGGTATCAATGCGA
EST: gi|100445114|gb|BY964413.1|BY964413
EST:     TGGCNGGAGAAGGGTGCTGTCACTTCTGTNCA-GGATCAAGGATCTTGCG                         GAAGCTGCTGGGCTTTTTCAGCGGGTGGATCCGTAGGAAG-TATCAATGCG
genomic: TGGCGGGAGAAGGGTGCTGTCACTTCTGT-CAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAG-AAGGTATCAATGCG
EST: gi|67572815|gb|BJ945639.1|BJ945639
EST:     CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCG                         GAAGCTGCTGGGCTTTTTTCAGCGGTTGGATCCG
genomic: CTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTT-CAGCGGTTGGATCCG
EST: gi|100406427|gb|BY955621.1|BY955621
EST:     TGGNCGG-AGAAGGGTGCTGTCACTTCTGTCAAGGATCA-GGATCTTGCG                         GAAGCTGCTNGGCTTTTTCAGCGGTTGGATCCGTAGAA
genomic: TGG-CGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaag ... cggccatcagGAAGCTGCTGGGCTTTTTCAGCGGTTGGATCCGTAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTACGGGGAGCTTCCGGTATGCGAATTCGGAAGCTCCGAAGTCTATTGACTGGCGGGAGAAGGGTGCTGTCACTTCTGTCAAGGATCAAGGATCTTGCGgtaagttaagatcgtgttttggtaggagctaagtggcttgagatgtgtgtaatcgagggttcgtggtttaagctctcttgggccttaacaattgtggatt

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