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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTGCAGTCGGCGACCTATTACCCATTCACCGACCTCTGCCTTTCACCGTGACATCATTCTACAGgttcgatttggttcattaagctattgcagtaatgattatatcagtccagattgcagttgctgctattcaatggagtacgcatattaaaaccgtagttcag...

Basic information

species Physcomitrella patens
transcript PP1S290_16V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18363987|gb|BJ196060.1|BJ196060
EST:     CTATTACCCATTCACCGACCTCTGCCTTTCACCGTGACATCATTCTACAG                         GTGTTGATGTAGCGTGTGGATGCTTTCCCCCACAACATTGTGACCCTCGCC
genomic: CTATTACCCATTCACCGACCTCTGCCTTTCACCGTGACATCATTCTACAGgttcgatttg ... ctgcacgcagGTGTTGATGTAGCGTGTGGATGCTTTCCCCCACAACATTGTGACCCTCGCC
EST: gi|18372492|gb|BJ204094.1|BJ204094
EST:     CTATTACCCATTCACCGACCTCTGCCTTTCACCGTGACATCATTCTACAG                         GTGTTGATGTAGCGTGTGGATGCTTTCCCCCACAACATTGTGACCCTCGCC
genomic: CTATTACCCATTCACCGACCTCTGCCTTTCACCGTGACATCATTCTACAGgttcgatttg ... ctgcacgcagGTGTTGATGTAGCGTGTGGATGCTTTCCCCCACAACATTGTGACCCTCGCC
EST: gi|18369178|gb|BJ201263.1|BJ201263
EST:     CTATTACCCATTCACCGACCTCTGCCTTTCACCGTGACATCATTCTACAG                         GTGTTGATGTAGCGTGTGGATGCTTTCCCCCACAACATTGTGACCCTCGCC
genomic: CTATTACCCATTCACCGACCTCTGCCTTTCACCGTGACATCATTCTACAGgttcgatttg ... ctgcacgcagGTGTTGATGTAGCGTGTGGATGCTTTCCCCCACAACATTGTGACCCTCGCC
EST: gi|18372542|gb|BJ204144.1|BJ204144
EST:     CTATTACCCATTCACCGACCTCTGCCTTTCACCGTGACATCATTCTACAG                         GTGTTGATGTAGCGTGTGGATGCTTTCCCCCACAACATTGTGACCCTCGCC
genomic: CTATTACCCATTCACCGACCTCTGCCTTTCACCGTGACATCATTCTACAGgttcgatttg ... ctgcacgcagGTGTTGATGTAGCGTGTGGATGCTTTCCCCCACAACATTGTGACCCTCGCC
EST: gi|18368818|gb|BJ200903.1|BJ200903
EST:     CTATTACCCATTCACCGACCTCTGCCTTTCACCGTGACATCATTCTACAG                         GTGTTGATGTAGCGTGTGGATGCTTTCCCCCACAACATTGTGACCCTCGCC
genomic: CTATTACCCATTCACCGACCTCTGCCTTTCACCGTGACATCATTCTACAGgttcgatttg ... ctgcacgcagGTGTTGATGTAGCGTGTGGATGCTTTCCCCCACAACATTGTGACCCTCGCC
EST: gi|18373553|gb|BJ205131.1|BJ205131
EST:     CTATTACCCATTCACCGACCTCTGCCTTTCACCGTGACATCATTCTACAG                         GTGTTGATGTAGCGTGTGGATGCTTTCCCCCACAACATTGTGACCCTCGCC
genomic: CTATTACCCATTCACCGACCTCTGCCTTTCACCGTGACATCATTCTACAGgttcgatttg ... ctgcacgcagGTGTTGATGTAGCGTGTGGATGCTTTCCCCCACAACATTGTGACCCTCGCC
EST: gi|18351804|gb|BJ183856.1|BJ183856
EST:     CTATTACCCATTCACCGACCTCTGCCTTTCACCGTGACATCATTCTACAG                         GTGTTGATGTAGCGTGTGGATGCTTTCCCCCACAACATTGTGACCCTCGCC
genomic: CTATTACCCATTCACCGACCTCTGCCTTTCACCGTGACATCATTCTACAGgttcgatttg ... ctgcacgcagGTGTTGATGTAGCGTGTGGATGCTTTCCCCCACAACATTGTGACCCTCGCC
EST: gi|18363410|gb|BJ195482.1|BJ195482
EST:     CTATTACCCATTCACCGACCTCTGCCTTTCACCGTGACATCATTCTACAG                         GTGTTGATGTAGCGTGTGGATGCTTTCCCCCACAACATTGTGACCCTCGCC
genomic: CTATTACCCATTCACCGACCTCTGCCTTTCACCGTGACATCATTCTACAGgttcgatttg ... ctgcacgcagGTGTTGATGTAGCGTGTGGATGCTTTCCCCCACAACATTGTGACCCTCGCC
EST: gi|18328564|gb|BJ160569.1|BJ160569
EST:     CTATTACCCATTCACCGACCTCTGCCTTTCACCGTGACATCATTCTACAG                         GTGTTGATGTAGCGTGTGGATGCTTTCCCCCACAACATTGTGACCCTCGCC
genomic: CTATTACCCATTCACCGACCTCTGCCTTTCACCGTGACATCATTCTACAGgttcgatttg ... ctgcacgcagGTGTTGATGTAGCGTGTGGATGCTTTCCCCCACAACATTGTGACCCTCGCC
EST: gi|18356181|gb|BJ188240.1|BJ188240
EST:     CTATTACCCATTCACCGACCTCTGCCTTTCACCGTGACATCATTCTACAG                         GTGTTGATGTAGCGTGTGGATGCTTTCCCCCACAACATTGTGACCCTCGCC
genomic: CTATTACCCATTCACCGACCTCTGCCTTTCACCGTGACATCATTCTACAGgttcgatttg ... ctgcacgcagGTGTTGATGTAGCGTGTGGATGCTTTCCCCCACAACATTGTGACCCTCGCC