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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAGTGAGTTCCCAGCGGAGGGAATCCATCGAAGGAAGAATTGGAGAATTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAGgtgagttggggcaatttgtgtatcttttggtggaggtggctgatgtttgttctgaatgtgtctagtgattctattcttaggttctgctcaaggttttgta...

Basic information

species Physcomitrella patens
transcript PP1S28_200V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18374405|gb|BJ205983.1|BJ205983
EST:     TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAG                         GGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG
genomic: TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAGgtgagttggg ... gtgaatacagGGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG
EST: gi|18356871|gb|BJ188930.1|BJ188930
EST:     TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAG                         GGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG
genomic: TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAGgtgagttggg ... gtgaatacagGGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG
EST: gi|18374613|gb|BJ206191.1|BJ206191
EST:     TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAG                         GGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG
genomic: TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAGgtgagttggg ... gtgaatacagGGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG
EST: gi|18359451|gb|BJ191512.1|BJ191512
EST:     TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAG                         GGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG
genomic: TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAGgtgagttggg ... gtgaatacagGGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG
EST: gi|18360928|gb|BJ192992.1|BJ192992
EST:     TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAG                         GGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG
genomic: TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAGgtgagttggg ... gtgaatacagGGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG
EST: gi|18356760|gb|BJ188819.1|BJ188819
EST:     TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAG                         GGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG
genomic: TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAGgtgagttggg ... gtgaatacagGGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG
EST: gi|18359826|gb|BJ191887.1|BJ191887
EST:     TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAG                         GGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG
genomic: TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAGgtgagttggg ... gtgaatacagGGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG
EST: gi|18360963|gb|BJ193027.1|BJ193027
EST:     TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAG                         GGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG
genomic: TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAGgtgagttggg ... gtgaatacagGGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG
EST: gi|18359149|gb|BJ191209.1|BJ191209
EST:     TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAG                         GGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG
genomic: TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAGgtgagttggg ... gtgaatacagGGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTGAGTGAGTTCCCAGCGGAGGGAATCCATCGAAGGAAGAATTGGAGAATTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAGgtgagttggggcaatttgtgtatcttttggtggaggtggctgatgtttgttctgaatgtgtctagtgattctattcttaggttctgctcaaggttttgta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT