Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGTTTACAGCTGCTAACTATCGTTGCTTCGACAGTTTCTGAAACGATTGCACTTGGGGTGATGCTCACCTGCAACCTGCGAAATCACCACTTACCTGGgtcagttcttcgctgtctcttttctcccaaactattgccttctgcacgttgtcatattgttggtttgtaattcacccgctgggaggaggagctccagccg...

Basic information

species Physcomitrella patens
transcript PP1S286_16V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67571874|gb|BJ944698.1|BJ944698
EST:     GCACTTGGGGTGATGCTCACCTGCAACCTGCGAAATCACCACTTACCTGG                         AGATTATTGAGGCAGCGAATTGGGTGCGAAAGCGTCGTAGAAATTCCCTGG
genomic: GCACTTGGGGTGATGCTCACCTGCAACCTGCGAAATCACCACTTACCTGGgtcagttctt ... ttccgtgcagAGATTATTGAGGCAGCGAATTGGGTGCGAAAGCGTCGTAGAAATTCCCTGG
EST: gi|208375555|gb|DC940525.1|DC940525
EST:     GCACTTGGGGTGATGCTCACCTGCAACCTGCGAAATCACCACTTACCTGG                         AGATTATTGAGGCAGCGAATTGGGTGCGAAAGCGTCGTAGAAATTCCCTGG
genomic: GCACTTGGGGTGATGCTCACCTGCAACCTGCGAAATCACCACTTACCTGGgtcagttctt ... ttccgtgcagAGATTATTGAGGCAGCGAATTGGGTGCGAAAGCGTCGTAGAAATTCCCTGG
EST: gi|100438348|gb|BY979912.1|BY979912
EST:     GCACTTGGGGTGATGCTCACCTGCAACCTGCGAAATCACCACTTACCTGG                         AGATTATTGAGGCAGCGAATTGGGTGCGAAAGCGTCGTAGAAATTCCCTGG
genomic: GCACTTGGGGTGATGCTCACCTGCAACCTGCGAAATCACCACTTACCTGGgtcagttctt ... ttccgtgcagAGATTATTGAGGCAGCGAATTGGGTGCGAAAGCGTCGTAGAAATTCCCTGG
EST: gi|100422558|gb|BY976433.1|BY976433
EST:     GCACTTGGGGTGATGCTCACCTGCAACCTGCGAAATCACCACTTACCTGG                         AGATTATTGAGGCAGCGAATTGGGTGCGAAAGCGTCGTAGAAATTCCCTGG
genomic: GCACTTGGGGTGATGCTCACCTGCAACCTGCGAAATCACCACTTACCTGGgtcagttctt ... ttccgtgcagAGATTATTGAGGCAGCGAATTGGGTGCGAAAGCGTCGTAGAAATTCCCTGG
EST: gi|100355587|gb|BY946009.1|BY946009
EST:     GCACTTGGNGTGATGCTCACCTGCAACCTGCGAAATCACCACTTACCTGG                         AGATTATTGAGGCAGCGAATTGGGTGCGAAAGCGTCGTAGAAATTCCCTGG
genomic: GCACTTGGGGTGATGCTCACCTGCAACCTGCGAAATCACCACTTACCTGGgtcagttctt ... ttccgtgcagAGATTATTGAGGCAGCGAATTGGGTGCGAAAGCGTCGTAGAAATTCCCTGG