1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGCGAAGTTGCAGAGGCAGCGGGTGGCGCATCGCTTGCCGGTCAAGGCTGCGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAGgtgggtgcttttgttgggtcaggactggggttttgcgcatgttgtgtctgcattgttgcccgcgtctcgtgcagtgggtttcgatcaagggagtttatgtccgatgcagtcacgatgcactcagcatcttaattcaaccctaaaatgtttcgggtctcctcactcttggttggaatgttgttttgagcag
species | Physcomitrella patens |
transcript | PP1S276_75V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAG GCTGGAGTAGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAGEST: gi|162187015|gb|FC363421.1|FC363421
genomic: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAGgtgggtgctt ... ttttgagcagGCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAG
EST: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAG GCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAGEST: gi|18355188|gb|BJ187247.1|BJ187247
genomic: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAGgtgggtgctt ... ttttgagcagGCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAG
EST: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAG GCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAGEST: gi|18349489|gb|BJ181538.1|BJ181538
genomic: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAGgtgggtgctt ... ttttgagcagGCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAG
EST: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAG GCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAGEST: gi|18343197|gb|BJ175235.1|BJ175235
genomic: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAGgtgggtgctt ... ttttgagcagGCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAG
EST: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAG GCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAGEST: gi|18354362|gb|BJ186418.1|BJ186418
genomic: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAGgtgggtgctt ... ttttgagcagGCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAG
EST: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAG GCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAGEST: gi|67572411|gb|BJ945235.1|BJ945235
genomic: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAGgtgggtgctt ... ttttgagcagGCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAG
EST: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAG GCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAGEST: gi|67569513|gb|BJ942337.1|BJ942337
genomic: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAGgtgggtgctt ... ttttgagcagGCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAG
EST: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAG GCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAGEST: gi|18369385|gb|BJ201471.1|BJ201471
genomic: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAGgtgggtgctt ... ttttgagcagGCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAG
EST: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAG GCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAGEST: gi|56082257|gb|BJ176717.2|BJ176717
genomic: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAGgtgggtgctt ... ttttgagcagGCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAG
EST: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAG GCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAGEST: gi|18344268|gb|BJ176308.1|BJ176308
genomic: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAGgtgggtgctt ... ttttgagcagGCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAG
EST: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAG GCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAGEST: gi|18372339|gb|BJ203941.1|BJ203941
genomic: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAGgtgggtgctt ... ttttgagcagGCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAG
EST: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAG GCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAGEST: gi|18355098|gb|BJ187157.1|BJ187157
genomic: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAGgtgggtgctt ... ttttgagcagGCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAG
EST: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAG GCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAGEST: gi|18372360|gb|BJ203962.1|BJ203962
genomic: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAGgtgggtgctt ... ttttgagcagGCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAG
EST: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAG GCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAGEST: gi|100363541|gb|BY966441.1|BY966441
genomic: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAGgtgggtgctt ... ttttgagcagGCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAG
EST: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAG GCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAGEST: gi|18366797|gb|BJ198876.1|BJ198876
genomic: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAGgtgggtgctt ... ttttgagcagGCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAG
EST: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAG GCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAG
genomic: CGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAGgtgggtgctt ... ttttgagcagGCTGGAGTTGACAAGCTTGCGGATCTAGTCGGTGTCACTTTGGGACCCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCGAAGTTGCAGAGGCAGCGGGTGGCGCATCGCTTGCCGGTCAAGGCTGCGAAGGAGCTTCATTTCAACAAGGATGGCTCCGCTATCAAGAGGATGCAGgtgggtgcttttgttgggtcaggactggggttttgcgcatgttgtgtctgcattgttgcccgcgtctcgtgcagtgggtttcgatcaagggagtttatgtccgatgcagtcacgatgcactcagcatcttaattcaaccctaaaatgtttcgggtctcctcactcttggttggaatgttgttttgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG