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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGCTCGTGTGCCCAAAAAGGTCTTGCAATTCGCCGGTATTGAAGACGTGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgggtttctcgttacacaatgccatagaaccctgtcaatttcattgttttttttgttttgttttgttttgttttgtgtttttttgttttttct...

Basic information

species Physcomitrella patens
transcript PP1S274_5V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S274_5V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA05G34570.1 (Glycine max), 5'ss of exon 1
GGCTGCTCGTGTGCCCAAAAAGGTCTTGCAATTCGCCGGTATTGAAGACGTGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgggtttctcgttacacaatgccatagaaccctgtcaatttcattgttttttttgttttgttttgttttgtt-ttgtgtttttttgttttttct--
 || ||| | || ||||| ||||||||||| ||||| || || || ||||| ||||| |||||  | || || || |||||||| ||||| |||||||||||    |     |  |  |   | |||    ||    | |     |||  ||   ||  |||| |  | | | ||  || | ||| ||| |  |   || |  
CGCCGCTAGGGTCCCCAAGAAGGTCTTGCAGTTCGCTGGAATCGATGACGTCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttgttaacttctcttattcttataatcatttaatgtctttc---ttttgtttaattgattgtctgatatagcttcattatcgtggtttataataagttatca

upper sequence: PP1S274_5V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ35105 (Selaginella moellendorffii), 5'ss of exon 1
GGCTGCTCGTGTGCCCAAAAAGGTCTTGCAATTCGCCGGTATTGAAGACGTGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgggtttc-tcgttacacaatgccatagaaccctgtcaatttcattgttttttttgttttgttttgttttgttttgtgtttttttgttttttct
 || ||||| || |||||||||||  | || || ||||| || || ||||| ||||| || |||||||| ||||| || || || |||||||||||||||||||| || | | |  |||||         | |  |  |  | | | ||  |  |  ||||||                                      
TGCCGCTCGCGTCCCCAAAAAGGTGCTCCAGTTTGCCGGGATCGAGGACGTTTTCACCTCGTCGCGCGGATCGACCAAGACTCTGGGAAACTTCGTCAAGgtgaggattgatctgatcgttct------tctttcactctcgacgagtttttcttggtttttggcag----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208382449|gb|DC927983.1|DC927983
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|100378275|gb|BY949769.1|BY949769
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCA-G                         GCTACTTTTGAGTGCCTCCNNTGA-GAC-TATGGATTCTTGACCCCTGATC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCC--TGAAGACCTATGGATTCTTGACCCCTGATC
EST: gi|18335855|gb|BJ167876.1|BJ167876
EST:     TGTTCACATGCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|162268408|gb|FC444177.1|FC444177
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|37826402|gb|BJ584414.1|BJ584414
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|208371905|gb|DC951869.1|DC951869
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|67704495|gb|BJ964728.1|BJ964728
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|208385919|gb|DC956757.1|DC956757
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|208374933|gb|DC956371.1|DC956371
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|162245196|gb|FC421618.1|FC421618
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|208365827|gb|DC951062.1|DC951062
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|67726446|gb|BJ976705.1|BJ976705
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|208397047|gb|DC928890.1|DC928890
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|208369010|gb|DC955095.1|DC955095
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|162278667|gb|FC454777.1|FC454777
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|7047259|gb|AW477153.1|AW477153
EST:     TGTTCACATCCTCGCGCGGGTCGACTAATACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTTCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|208363924|gb|DC947196.1|DC947196
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|162207394|gb|FC383951.1|FC383951
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|7584172|gb|AW700070.1|AW700070
EST:     ACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: ACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|208373143|gb|DC945125.1|DC945125
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|208381039|gb|DC919893.1|DC919893
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|18327609|gb|BJ159612.1|BJ159612
EST:     TGTTCACATGCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|208354176|gb|DC957410.1|DC957410
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|37825951|gb|BJ584017.1|BJ584017
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|208369846|gb|DC944226.1|DC944226
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|208381880|gb|DC923418.1|DC923418
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|18333317|gb|BJ165331.1|BJ165331
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|67727043|gb|BJ977302.1|BJ977302
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|67725952|gb|BJ976211.1|BJ976211
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|162207395|gb|FC383952.1|FC383952
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|208346295|gb|DC909559.1|DC909559
EST:     TGTTCACATCCTCNCGCGGGTCGACTAAANCC-TTGGAAACTNCGTCAAG                         NCTACTTTTGAGTGCCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTC
EST: gi|208392214|gb|DC949604.1|DC949604
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|37829642|gb|BJ587654.1|BJ587654
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|162260724|gb|FC435376.1|FC435376
EST:     TGTTCACATCCTCGCGCGGGTGGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|208392594|gb|DC938559.1|DC938559
EST:     TGTTCACATCCTCNCGCGGGTCGACTAAAACCCTNGNAA-CTTCGTCANG                         -CTACTTTTGAGT
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGT
EST: gi|162245197|gb|FC421619.1|FC421619
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|37846523|gb|BJ604531.1|BJ604531
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|162231109|gb|FC406220.1|FC406220
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|162268407|gb|FC444176.1|FC444176
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|208372897|gb|DC956292.1|DC956292
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|100387607|gb|BY951607.1|BY951607
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAA                         GCTACTTTTGAGTGCCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTC
EST: gi|162262496|gb|FC439721.1|FC439721
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|67698394|gb|BJ958627.1|BJ958627
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|208362451|gb|DC939459.1|DC939459
EST:     TGTTCACATCCTCGCGCGG-TCGACTAAANCC-TTGGAAACT-CGTCANG                         -CTACTTTTGAGTGCCTC-TGAAAAC-TATGGAT-CTTGACCC-TGATCT
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCT
EST: gi|208362939|gb|DC957936.1|DC957936
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|67574964|gb|BJ947788.1|BJ947788
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|208387299|gb|DC933050.1|DC933050
EST:     TGTNCACATCCTCGCGCGG-TCGACTAAAACC-TTGGAA-CT-CGTCANG                         -CTACTTTTGAGTG
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTG
EST: gi|67727599|gb|BJ977858.1|BJ977858
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|67723876|gb|BJ974135.1|BJ974135
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|208385586|gb|DC937131.1|DC937131
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTG
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTG
EST: gi|15326937|gb|BI487345.1|BI487345
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|208348903|gb|DC921675.1|DC921675
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|208369259|gb|DC955846.1|DC955846
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTACCTCCTGAAGACCTACGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|208350806|gb|DC925937.1|DC925937
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|208364155|gb|DC950419.1|DC950419
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|208385935|gb|DC956773.1|DC956773
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|162181968|gb|FC356839.1|FC356839
EST:     GTTCACATCCTCGCGCGGGTCGACTAANACCCTTGGAAACTTTCGTCA-G                         GCTACTTTTGAGTGCCTCCCTGA-GACCTATGGATTCTTGA
genomic: GTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTT-CGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCC-TGAAGACCTATGGATTCTTGA
EST: gi|208364141|gb|DC947273.1|DC947273
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|37850952|gb|BJ608960.1|BJ608960
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|208378335|gb|DC915361.1|DC915361
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|162260725|gb|FC435377.1|FC435377
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|162231108|gb|FC406219.1|FC406219
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|18341490|gb|BJ173525.1|BJ173525
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|162265766|gb|FC443172.1|FC443172
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|208368491|gb|DC947892.1|DC947892
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|67726798|gb|BJ977057.1|BJ977057
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|67724436|gb|BJ974695.1|BJ974695
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|162262495|gb|FC439720.1|FC439720
EST:     TGTTCACATCCTCGCGCGGGTGGACTAAAACCCTTGGAAATTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|162278668|gb|FC454778.1|FC454778
EST:     TGTTCACATCCTCGCGCGGGTCGACTAANACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|67727708|gb|BJ977967.1|BJ977967
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
EST: gi|37838577|gb|BJ596585.1|BJ596585
EST:     TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAG                         GCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC
genomic: TGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 46

GGCTGCTCGTGTGCCCAAAAAGGTCTTGCAATTCGCCGGTATTGAAGACGTGTTCACATCCTCGCGCGGGTCGACTAAAACCCTTGGAAACTTCGTCAAGgtgagaatgg ... tgattttcagGCTACTTTTGAGTGCCTCCTGAAGACCTATGGATTCTTGACCCCTGATCTCTGGAGAGAAACTCGGTTCTCTAAGTCGCCGTTCCAGGAATTTACCGACT




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