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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTCTTTTGCTTGGCTTCCTCTTCGCGGAGTATTCTCCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcccatctctcaggtctcgtgattttccttgtcgcacctttcgggtgggtgttctcgagcgtttcatttcggtggaggcatgggacttcaccg...

Basic information

species Physcomitrella patens
transcript PP1S270_77V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162242024|gb|FC418383.1|FC418383
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|67709281|gb|BJ965097.1|BJ965097
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162267395|gb|FC443938.1|FC443938
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|67728305|gb|BJ978564.1|BJ978564
EST:     AGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: AGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|18344148|gb|BJ176187.1|BJ176187
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|67728005|gb|BJ978264.1|BJ978264
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162263289|gb|FC439084.1|FC439084
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162248323|gb|FC420887.1|FC420887
EST:     CCCGCAATCTAGTGGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|18372574|gb|BJ204176.1|BJ204176
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162224993|gb|FC401409.1|FC401409
EST:     TCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: TCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162210545|gb|FC386841.1|FC386841
EST:     GTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: GTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|37821657|gb|BJ579723.1|BJ579723
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|18337274|gb|BJ169298.1|BJ169298
EST:     TCAAGTATCTCACCATG                         ACTGTCAAGAAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGT
genomic: TCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAG-AGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGT
EST: gi|162250115|gb|FC427424.1|FC427424
EST:     CCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162228848|gb|FC404693.1|FC404693
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|67726418|gb|BJ976677.1|BJ976677
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162271190|gb|FC446139.1|FC446139
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|37824897|gb|BJ582963.1|BJ582963
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|67725722|gb|BJ975981.1|BJ975981
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162262987|gb|FC440043.1|FC440043
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|7207196|gb|AW561199.1|AW561199
EST:     TATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: TATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|67726588|gb|BJ976847.1|BJ976847
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162244530|gb|FC422703.1|FC422703
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|37844962|gb|BJ602970.1|BJ602970
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|18345786|gb|BJ177829.1|BJ177829
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|18364735|gb|BJ196808.1|BJ196808
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162278058|gb|FC453877.1|FC453877
EST:     CAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162263288|gb|FC439083.1|FC439083
EST:     GTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: GTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162222851|gb|FC399313.1|FC399313
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|19790012|gb|BQ041648.1|BQ041648
EST:     TCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: TCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162205127|gb|FC381225.1|FC381225
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|6167142|gb|AW145406.1|AW145406
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|19782009|gb|BQ039799.1|BQ039799
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|37852094|gb|BJ610102.1|BJ610102
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|37836427|gb|BJ594435.1|BJ594435
EST:     CCCGCAATCTNGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|18362157|gb|BJ194225.1|BJ194225
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCA-CATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|18342515|gb|BJ174550.1|BJ174550
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162212991|gb|FC389207.1|FC389207
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|67717204|gb|BJ967463.1|BJ967463
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162263816|gb|FC438435.1|FC438435
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|19778781|gb|BQ039359.1|BQ039359
EST:     TTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: TTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162228849|gb|FC404694.1|FC404694
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162234035|gb|FC410522.1|FC410522
EST:     TTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: TTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|18357057|gb|BJ189116.1|BJ189116
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162267396|gb|FC443939.1|FC443939
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|37823342|gb|BJ581408.1|BJ581408
EST:     CGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162271640|gb|FC447525.1|FC447525
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162271189|gb|FC446138.1|FC446138
EST:     TCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: TCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162217999|gb|FC393683.1|FC393683
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162278057|gb|FC453876.1|FC453876
EST:     TCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: TCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|67718096|gb|BJ968355.1|BJ968355
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|67723695|gb|BJ973954.1|BJ973954
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162242878|gb|FC415308.1|FC415308
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|67719738|gb|BJ969997.1|BJ969997
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162205126|gb|FC381224.1|FC381224
EST:     TCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: TCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162210965|gb|FC387063.1|FC387063
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162202859|gb|FC379841.1|FC379841
EST:     GTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: GTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162212110|gb|FC388220.1|FC388220
EST:     CTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162251541|gb|FC425583.1|FC425583
EST:     CCCGCAATCTAGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162241670|gb|FC418653.1|FC418653
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|37841662|gb|BJ599670.1|BJ599670
EST:     CCCGCAATCTNGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|18329402|gb|BJ161408.1|BJ161408
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|19781256|gb|BQ039674.1|BQ039674
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|18346680|gb|BJ178725.1|BJ178725
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162242790|gb|FC415272.1|FC415272
EST:     TCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: TCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|18354263|gb|BJ186319.1|BJ186319
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|67717913|gb|BJ968172.1|BJ968172
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|67720047|gb|BJ970306.1|BJ970306
EST:     AGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: AGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162234036|gb|FC410523.1|FC410523
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|19782535|gb|BQ039864.1|BQ039864
EST:     CGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|208386641|gb|DC932689.1|DC932689
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|67702821|gb|BJ963054.1|BJ963054
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162248324|gb|FC420888.1|FC420888
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|162224994|gb|FC401410.1|FC401410
EST:     CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: CCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
EST: gi|7067201|gb|AW497056.1|AW497056
EST:     TGCCAGTGTCTGTCAAGTATCTCACCATG                         ACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC
genomic: TGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 34 (downstream exon)
Score: 61

CGCTCTTTTGCTTGGCTTCCTCTTCGCGGAGTATTCTCCCGCAATCTCGTCGTCGTTTTGCCAGTGTCTGTCAAGTATCTCACCATGgtaggtctcc ... attgtaacagACTGTCAAGAGGCGCAGTGGAGGTCGCAACAAGCATGGCCGTGGCCATGTCAACCCTATCAGGTGCTCCAACTGTGGGCGCTGCGTTCCCAAG




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