1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTACCCGATAGCCTTCATCGCATCGTATGCTTGACAGAGAGCACTGAAGTTGTAACGCCGTGTGCATATCGTGCGACTCGATTTCGTGGAATTTGCTGCGgtaggcggttcgcgggaggttgttcgttgagttttgtcggtttcgtcggggagggatcttagtggtttggttgcagcggtttctgcttctcgtgttggaa...
species | Physcomitrella patens |
transcript | PP1S26_103V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGTAACGCCGTGTGCATATCGTGCGACTCGATTTCGTGGAATTTGCTGCG GTGAAGGAGGATTGTCTCGTCGGAGGAAGTTTTAAGGTGTATCATCGCATTEST: gi|67571088|gb|BJ943912.1|BJ943912
genomic: TGTAACGCCGTGTGCATATCGTGCGACTCGATTTCGTGGAATTTGCTGCGgtaggcggtt ... tggatgtcagGTGAAGGAGGATTGTCTCGTCGGAGGAAGTTTTAAGGTGTATCATCGCATT
EST: TGTAACGCCGTGTGCATATCGTGCGACTCGATTTCGTGGAATTTGCTGCG GTGAAGGAGGATTGTCTCGTCGGAGGAAGTTTTAAGGTGTATCATCGCATTEST: gi|67571800|gb|BJ944624.1|BJ944624
genomic: TGTAACGCCGTGTGCATATCGTGCGACTCGATTTCGTGGAATTTGCTGCGgtaggcggtt ... tggatgtcagGTGAAGGAGGATTGTCTCGTCGGAGGAAGTTTTAAGGTGTATCATCGCATT
EST: TGTAACGCCGTGTGCATATCGTGCGACTCGATTTCGTGGAATTTGCTGCG GTGAAGGAGGATTGTCTCGTCGGAGGAAGTTTTAAGGTGTATCATCGCATTEST: gi|162232018|gb|FC409092.1|FC409092
genomic: TGTAACGCCGTGTGCATATCGTGCGACTCGATTTCGTGGAATTTGCTGCGgtaggcggtt ... tggatgtcagGTGAAGGAGGATTGTCTCGTCGGAGGAAGTTTTAAGGTGTATCATCGCATT
EST: TGTAACGCCGTGTGCATATCGTGCGACTCGATTTCGTGGAATTTGCTGCG GTGAAGGAGGATTGTCTCGTCGGAGGAAGTTTTAAGGTGTATCATCGCATTEST: gi|18352101|gb|BJ184155.1|BJ184155
genomic: TGTAACGCCGTGTGCATATCGTGCGACTCGATTTCGTGGAATTTGCTGCGgtaggcggtt ... tggatgtcagGTGAAGGAGGATTGTCTCGTCGGAGGAAGTTTTAAGGTGTATCATCGCATT
EST: TGTAACGCCGTGTGCATATCGTGCGACTCGATTTCGTGGAATTTGCTGCG GTGAAGGAGGATTGTCTCGTCGGAGGAAGTTTTAAGGTGTATCATCGCATTEST: gi|18327459|gb|BJ159462.1|BJ159462
genomic: TGTAACGCCGTGTGCATATCGTGCGACTCGATTTCGTGGAATTTGCTGCGgtaggcggtt ... tggatgtcagGTGAAGGAGGATTGTCTCGTCGGAGGAAGTTTTAAGGTGTATCATCGCATT
EST: TGTAACGCCGTGTGCATATCGTGCGACTCGATTTCGTGGAATTTGCTGCG GTGAAGGAGGATTGTCTCGTCGGAGGAAGTTTTAAGGTGTATCATCGCATTEST: gi|100376476|gb|BY986185.1|BY986185
genomic: TGTAACGCCGTGTGCATATCGTGCGACTCGATTTCGTGGAATTTGCTGCGgtaggcggtt ... tggatgtcagGTGAAGGAGGATTGTCTCGTCGGAGGAAGTTTTAAGGTGTATCATCGCATT
EST: TGTAACGCCGTGTGCATATCGTGCGACTCGATTTCGTGGAATTTGCTGCG GTGAAGGAGGATTGTCTCGTCGGAGGAAGTTTTAAGGTGTATCATCGCATTEST: gi|18342266|gb|BJ174301.1|BJ174301
genomic: TGTAACGCCGTGTGCATATCGTGCGACTCGATTTCGTGGAATTTGCTGCGgtaggcggtt ... tggatgtcagGTGAAGGAGGATTGTCTCGTCGGAGGAAGTTTTAAGGTGTATCATCGCATT
EST: TGTAACGCCGTGTGCATATCGTGCGACTCGATTTCGTGGAATTTGCTGCG GTGAAGGAGGATTGTCTCGTCGGAGGAAGTTTTAAGGTGTATCATCGCAATEST: gi|162276592|gb|FC451975.1|FC451975
genomic: TGTAACGCCGTGTGCATATCGTGCGACTCGATTTCGTGGAATTTGCTGCGgtaggcggtt ... tggatgtcagGTGAAGGAGGATTGTCTCGTCGGAGGAAGTTTTAAGGTGTATCATCGCATT
EST: TGTAACGCCGTGTGCATATCGTGCGACTCGATTTCGTGGAATTTGCTGCG GTGAAGGAGGATTGTCTCGTCGGAGGAAGTTTTAAGGTGTATCATCGCATTEST: gi|162202124|gb|FC377525.1|FC377525
genomic: TGTAACGCCGTGTGCATATCGTGCGACTCGATTTCGTGGAATTTGCTGCGgtaggcggtt ... tggatgtcagGTGAAGGAGGATTGTCTCGTCGGAGGAAGTTTTAAGGTGTATCATCGCATT
EST: CGCCGTGTGCATATCGTGCGACTCGATTTCGTGGAATTTGCTGCG GTGAAGGAGGATTGTCTCGTCGGAGGAAGTTTTAAGGTGTATCATCGCATT
genomic: CGCCGTGTGCATATCGTGCGACTCGATTTCGTGGAATTTGCTGCGgtaggcggtt ... tggatgtcagGTGAAGGAGGATTGTCTCGTCGGAGGAAGTTTTAAGGTGTATCATCGCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACCCGATAGCCTTCATCGCATCGTATGCTTGACAGAGAGCACTGAAGTTGTAACGCCGTGTGCATATCGTGCGACTCGATTTCGTGGAATTTGCTGCGgtaggcggttcgcgggaggttgttcgttgagttttgtcggtttcgtcggggagggatcttagtggtttggttgcagcggtttctgcttctcgtgttggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC