Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18366860|gb|BJ198940.1|BJ198940EST: AAGGAGTGTGTCTTTGAGTGCTTGCTAGCTCAGAAGAAGGACATCAAGAG AAAGCTTGCTACTTTCACTCAGCAACAGAAGAGCGATAAAGAGGACGAGTT
genomic: AAGGAGTGTGTCTTTGAGTGCTTGCTAGCTCAGAAGAAGGACATCAAGAGgtgatatgtt ... tttgttgcagAAAGCTTGCTACTTTCACTCAGCAACAGAAGAGCGATAAAGAGGACGAGTT
EST:
gi|22492254|gb|BU052177.1|BU052177EST: AAGGAGTGTGTCTTTGAGTGCTTGCTAGCTCAGAAGAAGGACATCAAGAG AAAGCTTGCTACTTTCACTCAGCAACAGAAGAGCGATAAAGAGGACGAGTT
genomic: AAGGAGTGTGTCTTTGAGTGCTTGCTAGCTCAGAAGAAGGACATCAAGAGgtgatatgtt ... tttgttgcagAAAGCTTGCTACTTTCACTCAGCAACAGAAGAGCGATAAAGAGGACGAGTT
EST:
gi|162269161|gb|FC445029.1|FC445029EST: AAGGAGTGTGTCTTTGAGTGCTTGCTAGCTCAGAAGAAGGACATCAAGAG AAAGCTTGCTACTTTCACTCAGCAACAGAAGAGCGATAAAGAGGACGAGTT
genomic: AAGGAGTGTGTCTTTGAGTGCTTGCTAGCTCAGAAGAAGGACATCAAGAGgtgatatgtt ... tttgttgcagAAAGCTTGCTACTTTCACTCAGCAACAGAAGAGCGATAAAGAGGACGAGTT
EST:
gi|162239366|gb|FC415426.1|FC415426EST: AAGGAGTGTGTCTTTGAGTGCTTGCTAGCTCAGAAGAAGGACATCAAGAG AAAGCTTGCTACTTTCACTCAGCAACAGAAGAGCGATAAAGAGGACGAGTT
genomic: AAGGAGTGTGTCTTTGAGTGCTTGCTAGCTCAGAAGAAGGACATCAAGAGgtgatatgtt ... tttgttgcagAAAGCTTGCTACTTTCACTCAGCAACAGAAGAGCGATAAAGAGGACGAGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACAGCCTGTAGTCGATCCTCTGAGCTGTGGCAAAGGACATTTGTTTTGCAAGGAGTGTGTCTTTGAGTGCTTGCTAGCTCAGAAGAAGGACATCAAGAGgtgatatgtttattcctgctcaagttgatggtctccacttcggcttatggtgaccctgttgaatgtgcgtggagcctggaaaactagaatttgaacactg
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG