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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAACTGGGCGAAAGGGCATTACACTGAGGGAGCTGAGTTAATCGACTCCGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattgacatctcgtcggtttgtggagcgctctgtgtactctgcctggttgatggttttgtcttagcgatgcgccgcctccttgggggacagtgctgtggatccccggtcttgtcgtctatgacgactacgttctagcaaaattgtccataaaatcgagtgctgaccttctctctctgtaacctcag

Basic information

species Physcomitrella patens
transcript PP1S252_90V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S252_90V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EDP02933 (Chlamydomonas reinhardtii), 5'ss of exon 3
AACAACTGGGCGAAAGGGCATTACACTGAGGGAGCTGAGTTAATCGACTCCGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattgacatctcgtcggtttgtgg--agcgctctgtgtactctgcctggt-tgatggttttgtcttagcgatgcgccgcctccttgggggacagtgctgtggatccccggtcttgtcgtctatgacgactacgttctagcaaaattgtccataaaatcgagtgctgaccttctctctctgtaacctcag
||||||||||| || || || ||||| ||||| |||||| | || |||||||| ||||||||||| ||||||||||| || ||||| ||||||||||| |||  ||| |        | | ||  |  |  || |    |    |   ||  ||  ||| ||  |  | |  ||  |||||| | || |      ||  |||||      | |   | |||  |     ||    |                                                          
AACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTGATTGACTCCGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagttctgcacgggccgtcgggtgtcagtgtatggaccgcagggctcggcatgacgggctgctttgggctgtgcgccccttcgtcttcacacgttgctgacttctctctcccctgttcttccctaccctcag---------------------------------------------------------

upper sequence: PP1S252_90V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EDP03008 (Chlamydomonas reinhardtii), 5'ss of exon 3
AACAACTGGGCGAAAGGGCATTACACTGAGGGAGCTGAGTTAATCGACTCCGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgca---ttg-acatctcgtcggtttgtggagcgctctgtgta---ctctgcctggttgatggttttgtcttagcgatgcgccgcctccttgggggacagtgctgtggatccccggtcttgtcgtctatgacgactacgttctagcaaaattgtccataaaatcgagtgctgaccttctctctctgtaacctcag
||||||||||| || || || ||||| ||||| |||||| | || |||||||| ||||||||||| ||||||||||| || ||||| ||||||||||| |||  |||   ||| ||    || ||| |   || | |      | |   ||  || ||   |   | |  ||||  ||    || || || |   ||   | |   | |     |  | | ||  | ||  | |                                                                
AACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTGATTGACTCCGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagttttgcacgggccgccgggtgtcggggtgtggaccgcagggcttggcatgacgggctgctgggtctgtgctcctcgtcgtcttcaacggttgctgacttctctcctcttgttgttcccttccctcag---------------------------------------------------------------

upper sequence: PP1S252_90V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ35740 (Selaginella moellendorffii), 5'ss of exon 1
AACAACTGGGCGAAAGGGCATTACACTGAGGGAGCTGAGTTAATCGACTCCGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattgacatctcgtcggtttgtggagcgctctgtgtactctgcctggttgatggttttgtcttagcgatgcgccgcctccttgggggacagtgctgtggatccccggtcttgtcgtctatgacgactacgttctagcaaaattgtccataaaatcgagtgctgaccttctctctctgtaacctcag
||||||||||| ||||| ||||| || || || || ||||| |||||  | ||||| ||||| || ||||||||||| || | ||| ||||||||||||||||   | |||        |    | || |||         | | |   |  ||  |  |||||| | |||                                                                                                                        
AACAACTGGGCCAAAGGTCATTATACAGAAGGTGCCGAGTTGATCGATGCTGTTCTCGACGTTGTTCGCAAGGAGGCTGAGAACTGCGACTGCCTGCAAGgta--aaatgaacgaaaaccacactttgaagcaaa--aaagatttttttttttttttttttttgt-tgagcag----------------------------------------------------------------------------------------------------------------------

upper sequence: PP1S252_90V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ10691 (Selaginella moellendorffii), 5'ss of exon 1
AACAACTGGGCGAAAGGGCATTACACTGAGGGAGCTGAGTTAATCGACTCCGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattgacatctcgtcggtttgtggagcgctctgtgtactctgcctggttgatggttttgtcttagcgatgcgccgcctccttgggggacagtgctgtggatccccggtcttgtcgtctatgacgactacgttctagcaaaattgtccataaaatcgagtgctgaccttctctctctgtaacctcag
||||||||||| ||||| ||||| || || || || ||||| |||||  | ||||| || || || ||||||||||| || | ||| ||||||||||||||||   ||  ||             |   | | | || || |        |  |  |  |||| | ||   | || || |                                                                                                               
AACAACTGGGCCAAAGGTCATTATACAGAAGGTGCCGAGTTGATCGATGCTGTTCTCGATGTTGTTCGCAAGGAGGCTGAGAACTGCGACTGCCTGCAAGgtaaa-atgaac-------------gaaaaccacactttgaagcaaaaaagaattttttttttttttttttgttgagcag---------------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208364162|gb|DC943418.1|DC943418
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|18331801|gb|BJ163812.1|BJ163812
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAG
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAG
EST: gi|100448811|gb|CJ973110.1|CJ973110
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|162181456|gb|FC358070.1|FC358070
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|208364244|gb|DC935515.1|DC935515
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|100444579|gb|BY964277.1|BY964277
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGA-
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|100390406|gb|BY952814.1|BY952814
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|18325962|gb|BJ157961.1|BJ157961
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCAC
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCAC
EST: gi|67716477|gb|BJ966737.1|BJ966737
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|18344876|gb|BJ176917.1|BJ176917
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTANGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|208345316|gb|DC912947.1|DC912947
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|100413051|gb|BY992564.1|BY992564
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|208384676|gb|DC915251.1|DC915251
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|18330802|gb|BJ162808.1|BJ162808
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTC
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTC
EST: gi|100411997|gb|BY956366.1|BY956366
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAAGGTG-AACTGGGTTCTGGAATGGG
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGA-GGTGGAACTGG-TTCTGGAATGGG
EST: gi|162250828|gb|FC426872.1|FC426872
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|208356340|gb|DC914258.1|DC914258
EST:     CGTTCTGGACGTCATGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTANGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|100448434|gb|CJ972733.1|CJ972733
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|208347686|gb|DC912889.1|DC912889
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTANGANGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|208394212|gb|DC933880.1|DC933880
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|162176333|gb|FC353518.1|FC353518
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|162190322|gb|FC365336.1|FC365336
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|100388715|gb|BY970863.1|BY970863
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|100436285|gb|BY961140.1|BY961140
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|100365092|gb|BY966806.1|BY966806
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTT-CCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGGATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|208366058|gb|DC935847.1|DC935847
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|100361159|gb|BY946943.1|BY946943
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|67717643|gb|BJ967902.1|BJ967902
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|67709866|gb|BJ965682.1|BJ965682
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|100387646|gb|BY951646.1|BY951646
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|162163453|gb|FC339987.1|FC339987
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|208355798|gb|DC910640.1|DC910640
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGCGCCACAGTTTANGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|100395909|gb|BY972188.1|BY972188
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAGAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGA
EST: gi|100438749|gb|BY961783.1|BY961783
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGAAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|162156448|gb|FC332680.1|FC332680
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|162165264|gb|FC340791.1|FC340791
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|100452884|gb|CJ975491.1|CJ975491
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGANGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|100446052|gb|CJ970351.1|CJ970351
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|18359023|gb|BJ191083.1|BJ191083
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTA
EST: gi|100383658|gb|BY969187.1|BY969187
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|67709887|gb|BJ965703.1|BJ965703
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|67717151|gb|BJ967410.1|BJ967410
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|67702171|gb|BJ962404.1|BJ962404
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACA
EST: gi|100442058|gb|BY962951.1|BY962951
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
EST: gi|18373169|gb|BJ204771.1|BJ204771
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGA
EST: gi|100377482|gb|BY986271.1|BY986271
EST:     CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAG                         GTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA
genomic: CGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 24 (downstream exon)
Score: 6

AACAACTGGGCGAAAGGGCATTACACTGAGGGAGCTGAGTTAATCGACTCCGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattg ... gtaacctcagGTTTCCAGGTGTGCCACAGTTTAGGAGGTGGAACTGGTTCTGGAATGGGAACCCTCCTCATCTCTAAGATCAGAGAAGAGTATCCCGACCGGATGATGCT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACAACTGGGCGAAAGGGCATTACACTGAGGGAGCTGAGTTAATCGACTCCGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattgacatctcgtcggtttgtggagcgctctgtgtactctgcctggttgatggttttgtcttagcgatgcgccgcctccttgggggacagtgctgtggatccccggtcttgtcgtctatgacgactacgttctagcaaaattgtccataaaatcgagtgctgaccttctctctctgtaacctcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG