1 5' 3' | 2 5' 3' | 3 5' 3' |
AACAACTGGGCGAAGGGGCATTACACGGAGGGAGCGGAGTTGATCGACTCGGTGTTGGATGTGGTGCGGAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtacgggtggattagtgtgtcggcgttgatggaggaggggagatgggcagtgggtgaggttgggagggaaacggcgagtagaaacgcatagatgggaagggtgtgtttgtttgtgtgggtgctgatgcggtgggggatgtgggtgtgcag
species | Physcomitrella patens |
transcript | PP1S252_101V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGTGTTGGATGTGGTGCGGAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG GTTTCCAGGTGTGCCACAGTTTGGGAGGAGGGACAGGATCGGGAATGGGGAEST: gi|100396522|gb|BY990167.1|BY990167
genomic: GGTGTTGGATGTGGTGCGGAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtacgggtgg ... gggtgtgcagGTTTCCAGGTGTGCCACAGTTTGGGAGGAGGGACAGGATCGGGAATGGGGA
EST: GGTGTTGGATGTGGTGCGGAAAGAGGCTGAAAGCTGCGACTGCTTGCAAG GTTTCCAGGTGTGCCACAGTTTGGGAGGAGGGACAGGATCGGGAATGGGGAEST: gi|208362402|gb|DC930963.1|DC930963
genomic: GGTGTTGGATGTGGTGCGGAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtacgggtgg ... gggtgtgcagGTTTCCAGGTGTGCCACAGTTTGGGAGGAGGGACAGGATCGGGAATGGGGA
EST: GGTGTTGGATGTGGTGCGGAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG GTTTCCAGGTGTGCCACAGTTTGGGAGGAGGGACAGGATCGGGAATGGGGAEST: gi|100428941|gb|BY959510.1|BY959510
genomic: GGTGTTGGATGTGGTGCGGAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtacgggtgg ... gggtgtgcagGTTTCCAGGTGTGCCACAGTTTGGGAGGAGGGACAGGATCGGGAATGGGGA
EST: GGTGTTGGATGTGGTGCGGAAGGAGGCTGAGAGCTGCGACTGCCTGCAAG GGTTTCCAGGTGTGCCACAGGTTTGGGAGGAGGGACAGGATCGGGAAATGGEST: gi|162214728|gb|FC391799.1|FC391799
genomic: GGTGTTGGATGTGGTGCGGAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtacgggtgg ... gggtgtgcagG-TTTCCAGGTGTGCCACAG-TTTGGGAGGAGGGACAGGATCGGGAA-TGG
EST: GGTGTTGGATGTGGTGCGGAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG GTTTCCAGGTGTGCCACAGTTTGGGAGGAGGGACAGGATCGGGAATGGGGAEST: gi|208372060|gb|DC940242.1|DC940242
genomic: GGTGTTGGATGTGGTGCGGAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtacgggtgg ... gggtgtgcagGTTTCCAGGTGTGCCACAGTTTGGGAGGAGGGACAGGATCGGGAATGGGGA
EST: GGTGTTGGATGTGGTGCGGAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG GTTTCCAGGTGTGCCACAGTTTGGGAGGAGGGACAGGATCGGGAATGGGGAEST: gi|100414422|gb|BY992767.1|BY992767
genomic: GGTGTTGGATGTGGTGCGGAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtacgggtgg ... gggtgtgcagGTTTCCAGGTGTGCCACAGTTTGGGAGGAGGGACAGGATCGGGAATGGGGA
EST: GGTGTTGGATGTGGTGCGGGAGGAGGCTGAGAGCTGCGACTGCTTGCAAG GTTTCCAGGTGTGCCACAGTTTGGGAGGAGGGACAGGATCGGGAATGGGGA
genomic: GGTGTTGGATGTGGTGCGGAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtacgggtgg ... gggtgtgcagGTTTCCAGGTGTGCCACAGTTTGGGAGGAGGGACAGGATCGGGAATGGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACAACTGGGCGAAGGGGCATTACACGGAGGGAGCGGAGTTGATCGACTCGGTGTTGGATGTGGTGCGGAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtacgggtggattagtgtgtcggcgttgatggaggaggggagatgggcagtgggtgaggttgggagggaaacggcgagtagaaacgcatagatgggaagggtgtgtttgtttgtgtgggtgctgatgcggtgggggatgtgggtgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC