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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTTGCGCTGCCTTCATGCTGCTCGTGTCGGTCTTGCCGGTTGTGCCGCTCGCATCTGGGTTCTACTTGCCTGGCGTGGCGCCCCTGGACCTTGCTCAGgtatgtgtgttactgcgggatccgttggtaaagggtgtggaagaggtgggaggattttttttttggcgaaatgtttttagagggtttggttttgcggcgt...

Basic information

species Physcomitrella patens
transcript PP1S24_182V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100422504|gb|BY976406.1|BY976406
EST:     TCGCATCTGGGTTCTACTTGCCTGGCGTGGCGCCCCTGGACCTTGCTCAG                         GGTGATGATGTTCAAGTGAAGGTGAACAAATTAACATCCACGAAGACACAA
genomic: TCGCATCTGGGTTCTACTTGCCTGGCGTGGCGCCCCTGGACCTTGCTCAGgtatgtgtgt ... tttgaaacagGGTGATGATGTTCAAGTGAAGGTGAACAAATTAACATCCACGAAGACACAA
EST: gi|18325719|gb|BJ157716.1|BJ157716
EST:     TCGCATCTGGGTTCTACTTGCCTGGCGTGGCGCCCCTGGACCTTGCTCAG                         GGTGATGATGTTCAAGTGAAGGTGAACAAATTAACATCCACGAAGACACAA
genomic: TCGCATCTGGGTTCTACTTGCCTGGCGTGGCGCCCCTGGACCTTGCTCAGgtatgtgtgt ... tttgaaacagGGTGATGATGTTCAAGTGAAGGTGAACAAATTAACATCCACGAAGACACAA
EST: gi|208350408|gb|DC906110.1|DC906110
EST:     TCGCATCTGGGTTCTACTTGCCTGGCGTGGCGCCCCTGGACCTTGCTCAG                         GGTGATGATGTTCAAGTGAAGGTGAACAAATTAACATCCACGAAGACACAA
genomic: TCGCATCTGGGTTCTACTTGCCTGGCGTGGCGCCCCTGGACCTTGCTCAGgtatgtgtgt ... tttgaaacagGGTGATGATGTTCAAGTGAAGGTGAACAAATTAACATCCACGAAGACACAA
EST: gi|18344133|gb|BJ176172.1|BJ176172
EST:     TCGCATCTGGGTTCTACTTGCCTGGCGTGGCGCCCCTGGACCTTGCTCAG                         GGTGATGATGTTCAAGTGAAGGTGAACAAATTAACATCCACGAAGACACAA
genomic: TCGCATCTGGGTTCTACTTGCCTGGCGTGGCGCCCCTGGACCTTGCTCAGgtatgtgtgt ... tttgaaacagGGTGATGATGTTCAAGTGAAGGTGAACAAATTAACATCCACGAAGACACAA
EST: gi|18328604|gb|BJ160609.1|BJ160609
EST:     TCGCATCTGGGTTCTACTTGCCTGGCGTGGCGCCCCTGGACCTTGCTCAG                         GGTGATGATGTTCAAGTGAAGGTGAACAAATTAACATCCACGAAGACACAA
genomic: TCGCATCTGGGTTCTACTTGCCTGGCGTGGCGCCCCTGGACCTTGCTCAGgtatgtgtgt ... tttgaaacagGGTGATGATGTTCAAGTGAAGGTGAACAAATTAACATCCACGAAGACACAA
EST: gi|18362477|gb|BJ194547.1|BJ194547
EST:     TCGCATCTGGGTTCTACTTGCCTGGCGTGGCGCCCCTGGACCTTGCTCAG                         GGTGATGATGTTCAAGTGAAGGTGAACAAATTAACATCCACGAAGACACAA
genomic: TCGCATCTGGGTTCTACTTGCCTGGCGTGGCGCCCCTGGACCTTGCTCAGgtatgtgtgt ... tttgaaacagGGTGATGATGTTCAAGTGAAGGTGAACAAATTAACATCCACGAAGACACAA
EST: gi|18325392|gb|BJ157388.1|BJ157388
EST:     TCGCATCTGGGTTCTACTTGCCTGGCGTGGCGCCCCTGGACCTTGCTCAG                         GGTGATGATGTTCAAGTGAAGGTGAACAAATTAACATCCACGAAGACACAA
genomic: TCGCATCTGGGTTCTACTTGCCTGGCGTGGCGCCCCTGGACCTTGCTCAGgtatgtgtgt ... tttgaaacagGGTGATGATGTTCAAGTGAAGGTGAACAAATTAACATCCACGAAGACACAA
EST: gi|162256884|gb|FC432986.1|FC432986
EST:     TCGCATCTGGGTTCTACTTGCCTGGCGTGGCGCCCCTGGACCTTGCTCAG                         GGTGATGATGTTCAAGTGAAGGTGAACAAATTAACATCCACGAAGACACAA
genomic: TCGCATCTGGGTTCTACTTGCCTGGCGTGGCGCCCCTGGACCTTGCTCAGgtatgtgtgt ... tttgaaacagGGTGATGATGTTCAAGTGAAGGTGAACAAATTAACATCCACGAAGACACAA
EST: gi|100405258|gb|BY955435.1|BY955435
EST:     TCGCATCTGGGTTCTACTTGCCTGGCGTGGCGCCCCTGGACCTTGCTCAG                         GGTGATGATGTTCAAGTGAAGGTGAACAAATTAACATCCACGAAGACACGA
genomic: TCGCATCTGGGTTCTACTTGCCTGGCGTGGCGCCCCTGGACCTTGCTCAGgtatgtgtgt ... tttgaaacagGGTGATGATGTTCAAGTGAAGGTGAACAAATTAACATCCACGAAGACACAA
EST: gi|67704072|gb|BJ964305.1|BJ964305
EST:     TCGCATCTGGGTTCTACTTGCCTGGCGTGGCGCCCCTGGACCTTGCTCAG                         GGTGATGATGTTCAAGTGAAGGTGAACAAATTAACATCCACGAAGACACAA
genomic: TCGCATCTGGGTTCTACTTGCCTGGCGTGGCGCCCCTGGACCTTGCTCAGgtatgtgtgt ... tttgaaacagGGTGATGATGTTCAAGTGAAGGTGAACAAATTAACATCCACGAAGACACAA
EST: gi|208352204|gb|DC906307.1|DC906307
EST:     TCGCATCTGGGTTCTACTTGCCTGGCGTGGCGCCCCTGGACCTTGCTCAG                         GGTGATGATGTTCAAGTGAANGTGAACAAATTAACATCCACGAANACACAA
genomic: TCGCATCTGGGTTCTACTTGCCTGGCGTGGCGCCCCTGGACCTTGCTCAGgtatgtgtgt ... tttgaaacagGGTGATGATGTTCAAGTGAAGGTGAACAAATTAACATCCACGAAGACACAA
EST: gi|18362890|gb|BJ194962.1|BJ194962
EST:     TCGCATCTGGGTTCTACTTGCCTGGCGTGGCGCCCCTGGACCTTGCTCAG                         GGTGATGATGTTCAAGTGAAGGTGAACAAATTAACATCCACGAAGACACAA
genomic: TCGCATCTGGGTTCTACTTGCCTGGCGTGGCGCCCCTGGACCTTGCTCAGgtatgtgtgt ... tttgaaacagGGTGATGATGTTCAAGTGAAGGTGAACAAATTAACATCCACGAAGACACAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 25 (upstream exon), 11 (downstream exon)
Score: 1

CGCTTGCGCTGCCTTCATGCTGCTCGTGTCGGTCTTGCCGGTTGTGCCGCTCGCATCTGGGTTCTACTTGCCTGGCGTGGCGCCCCTGGACCTTGCTCAGgtatgtgtgt ... tttgaaacagGGTGATGATGTTCAAGTGAAGGTGAACAAATTAACATCCACGAAGACACAACTTCCATATGAATACTACTCTCTTGACTACTGCACGCCGAAGAAAATTG




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