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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGACTCTGCTTCTGCGGTACTGTTCATTCCCTCGCTCTCTCGGCGTTCCGTCTCTTCACCCTTTTCTCTTGAGCAACCACCGGAGTGCGCTACTTACGgtgcgtcgacgcactctctggcggccgtttctttttgcgtttttaggcacgtgttggcggtacttgttgtgagaattgagtgatgttcgtgcatcgcttt...

Basic information

species Physcomitrella patens
transcript PP1S249_49V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19788925|gb|BQ041001.1|BQ041001
EST:     CGTCTCTTCACCCTTTTCTCTTGAGCAACCACCGGAGTGCGCTACTTACG                         CGTAGGTGTCGTAAGCGGAGGCAACCATGGCGAAAAACTCGTTCAAGCAAG
genomic: CGTCTCTTCACCCTTTTCTCTTGAGCAACCACCGGAGTGCGCTACTTACGgtgcgtcgac ... ttctctgcagCGTAGGTGTCGTAAGCGGAGGCAACCATGGCGAAAAACTCGTTCAAGCAAG
EST: gi|162269518|gb|FC445074.1|FC445074
EST:     CGTCTCTTCACCCTTTTCTCTTGAGCAACCACCGGAGTGCGCTACTTACG                         CGTAGGTGTCGTAAGCGGAGGCAACCATGGCGAAAAACTCGTTCAAGCAAG
genomic: CGTCTCTTCACCCTTTTCTCTTGAGCAACCACCGGAGTGCGCTACTTACGgtgcgtcgac ... ttctctgcagCGTAGGTGTCGTAAGCGGAGGCAACCATGGCGAAAAACTCGTTCAAGCAAG
EST: gi|162269519|gb|FC445075.1|FC445075
EST:     CGTCTCTTCACCCTTTTCTCTTGAGCAACCACCGGAGTGCGCTACTTACG                         CGTAGGTGTCGTAAGCGGAGGCAACCATGGCGAAAAACTCGTTCAAGCAAG
genomic: CGTCTCTTCACCCTTTTCTCTTGAGCAACCACCGGAGTGCGCTACTTACGgtgcgtcgac ... ttctctgcagCGTAGGTGTCGTAAGCGGAGGCAACCATGGCGAAAAACTCGTTCAAGCAAG