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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATGCGATCAAGACCAGGGCAGACACCGATGTATTGGATGATGGTTACAAGTGGCGCAAGTATGGACAGAAGGCAGTTAAAAACAGTCCTCATCCCAGgtacttcacactactggtctaatttctgtgcacgcaaccttggcagtgctattgctctgatccactgcacatgcatacagtggaaccatcaagtctctcg...

Basic information

species Physcomitrella patens
transcript PP1S244_77V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S244_77V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA01G06870.4 (Glycine max), 5'ss of exon 2
GCTATGCGATCAAGACCAGGGCAGACACCGATGTATTGGATGATGGTTACAAGTGGCGCAAGTATGGACAGAAGGCAGTTAAAAACAGTCCTCATCCCAGgtacttcacactactggtctaatttctgtgcacgcaaccttggcagtgctattgctctgatccactgcacatgcatacagtggaaccatcaagt-ctctcg-----
| | |||  | | ||||| |   ||    |||    | || ||||| ||||  ||||| |||||||| ||||||||||||||||| ||||||   || ||||   | |||   ||    | |  ||     |  |     |   | | | |    ||    | | |    ||  |||      ||  ||||  | |  | |     
GGTTTGCATTTATGACCAAGAGTGAAGTTGATCATCTTGAGGATGGCTACAGATGGCGGAAGTATGGTCAGAAGGCAGTTAAAAATAGTCCTTTCCCTAGgt---ttaca--gctaccttcacatcaaactaaactttaattatattaccaaaattcctgccaattat-tataaatatccaaaaaatatcatatacaattgattat

upper sequence: PP1S244_77V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA02G12830.1 (Glycine max), 5'ss of exon 2
GCTATGCGATCAAGACCAGGGCAGACACCGATGTATTGGATGATGGTTACAAGTGGCGCAAGTATGGACAGAAGGCAGTTAAAAACAGTCCTCATCCCAGgtacttcac-actactggtctaatttctgtgcacgcaaccttggcagtgctattgctctgatccactgcacatgcatacagtgga---accatcaagtctctcg
| | |||  | | ||||| | | ||    |||    | || ||||| ||||  ||||| |||||||| ||||||||||||||||| ||||||   || ||||      | ||         || ||      |    |  ||  |||   ||||||     ||   |  | ||  | | | | ||   || ||  | | |    
GGTTTGCATTTATGACCAAGACTGAAGTTGATCATCTTGAGGATGGCTACAGATGGCGGAAGTATGGTCAGAAGGCAGTTAAAAATAGTCCTTTCCCTAGgtttacagctaccttcacatcaaattaaacttaaatcatattaccagaattattgcaa-attcttataaatatcaaaaaatttgatatacaattgattatt---