1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCATAGGCACTCCAATGCGCTAGTCGATGTGCTGCCTCCTGAAGCCGATTCTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAACgtacgttctttctggtctcaacattaaatttgcgcttctgtggatttgaaacgtacacatgtacatgattttcgaagggtagtgtttgtcaatttcgaag...
species | Physcomitrella patens |
transcript | PP1S243_67V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAAC GATATTGGTGGGTGTGACATTCAGAAGCAAGAGATTAGGGAAGCAGTAEST: gi|100439418|gb|BY961923.1|BY961923
genomic: CTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAACgtacgttctt ... ctgggtgcagGATATTGGTGGGTGTGACATTCAGAAGCAAGAGATTAGGGAAGCAGTA
EST: CTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAAC GATATTGGTGGGTGTGACATTCAGAAGCAAGAGATTAGGGAAGCAGTAGAGEST: gi|162164771|gb|FC340493.1|FC340493
genomic: CTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAACgtacgttctt ... ctgggtgcagGATATTGGTGGGTGTGACATTCAGAAGCAAGAGATTAGGGAAGCAGTAGAG
EST: CTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAAC GATATTGGTGGGTGTGACATTCAGAAGCAAGAGATTAGGGAAGCAGTAGAGEST: gi|162186125|gb|FC361329.1|FC361329
genomic: CTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAACgtacgttctt ... ctgggtgcagGATATTGGTGGGTGTGACATTCAGAAGCAAGAGATTAGGGAAGCAGTAGAG
EST: CTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAAC GATATTGGTGGGTGTGACATTCAGAAGCAAGAGATTAGGGAAGCAGTAGAGEST: gi|208362233|gb|DC939657.1|DC939657
genomic: CTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAACgtacgttctt ... ctgggtgcagGATATTGGTGGGTGTGACATTCAGAAGCAAGAGATTAGGGAAGCAGTAGAG
EST: CTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAAC GATATTGGTGGGTGTGACATTCAGAAGCAAGAGATTAGGGAAGCAGTAGAGEST: gi|208357180|gb|DC942758.1|DC942758
genomic: CTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAACgtacgttctt ... ctgggtgcagGATATTGGTGGGTGTGACATTCAGAAGCAAGAGATTAGGGAAGCAGTAGAG
EST: CTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAAC GATATTGGTGGGTGTGACATTCAGAAGCAAGAGATTAGGGAAGCAGTAAAGEST: gi|208391711|gb|DC937943.1|DC937943
genomic: CTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAACgtacgttctt ... ctgggtgcagGATATTGGTGGGTGTGACATTCAGAAGCAAGAGATTAGGGAAGCAGTAGAG
EST: CTAGCATTTCGTTGTTGACACAATCGGGGAAGCCTGATGTGTCGTATAAC GATATTGGTGGGTGTGACATTCAGAAGCAAGAGATTAGGGAAAGCAGTAGAEST: gi|100428267|gb|BY977717.1|BY977717
genomic: CTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAACgtacgttctt ... ctgggtgcagGATATTGGTGGGTGTGACATTCAGAAGCAAGAGATTAGGGAA-GCAGTAGA
EST: CTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAAC GATATTGGTGGGTGTGACATTCAGAAGCAAGAGATTAGGGAAGCAGEST: gi|100355647|gb|BY946039.1|BY946039
genomic: CTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAACgtacgttctt ... ctgggtgcagGATATTGGTGGGTGTGACATTCAGAAGCAAGAGATTAGGGAAGCAG
EST: CTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAAC GATATTGGTGGGTGTGACATTCAGAAAGCA-GAGATTAGGGAAGCAGTAGAEST: gi|208356726|gb|DC902558.1|DC902558
genomic: CTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAACgtacgttctt ... ctgggtgcagGATATTGGTGGGTGTGACATTCAGAA-GCAAGAGATTAGGGAAGCAGTAGA
EST: CTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAAC GATATTGGTGGGTGTGACATTCAGAAGCAAGAGATTAGGGAAGCAGTAGAGEST: gi|208364561|gb|DC930951.1|DC930951
genomic: CTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAACgtacgttctt ... ctgggtgcagGATATTGGTGGGTGTGACATTCAGAAGCAAGAGATTAGGGAAGCAGTAGAG
EST: CTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAAC GATATTGGTGGGTGTGACATTCAGAAGCAAGAGATTAGGGAAGCAGTAGAGEST: gi|100441057|gb|BY980678.1|BY980678
genomic: CTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAACgtacgttctt ... ctgggtgcagGATATTGGTGGGTGTGACATTCAGAAGCAAGAGATTAGGGAAGCAGTAGAG
EST: CTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAAC GATATTGGTGGGTGTGACATTCAGAAGCAAGAGATTAGGGGAGCAGTAGAGEST: gi|100371726|gb|BY948777.1|BY948777
genomic: CTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAACgtacgttctt ... ctgggtgcagGATATTGGTGGGTGTGACATTCAGAAGCAAGAGATTAGGGAAGCAGTAGAG
EST: CTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAAC GATATTGGTGGGTGTGACATTCAGAAGCAAGAGATTAGGGAAGCAGTAGAGEST: gi|67712869|gb|BJ966318.1|BJ966318
genomic: CTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAACgtacgttctt ... ctgggtgcagGATATTGGTGGGTGTGACATTCAGAAGCAAGAGATTAGGGAAGCAGTAGAG
EST: CTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAAC GATATTGGTGGGTGTGACATTCAGAAGCAAGAGATTAGGGAAGCAGTAGAG
genomic: CTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAACgtacgttctt ... ctgggtgcagGATATTGGTGGGTGTGACATTCAGAAGCAAGAGATTAGGGAAGCAGTAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATAGGCACTCCAATGCGCTAGTCGATGTGCTGCCTCCTGAAGCCGATTCTAGCATTTCGTTGTTGACACAATCGGAGAAGCCTGATGTGTCGTATAACgtacgttctttctggtctcaacattaaatttgcgcttctgtggatttgaaacgtacacatgtacatgattttcgaagggtagtgtttgtcaatttcgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC