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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTTCGGTGGCTGCGTTCCGGACCAGTATGCTGTTTGTTTTCTCATTCTGAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTCgtaatctctcatgccctcgctctctccccctctctctctctctccagctccccgtcaattgcgatctctatcttgttgcagtattcgaacgggtatttaa...

Basic information

species Physcomitrella patens
transcript PP1S243_27V6.5
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100410611|gb|BY992184.1|BY992184
EST:     GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTC                         AGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
genomic: GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTCgtaatctctc ... tgatgtaaagAGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
EST: gi|162269880|gb|FC445397.1|FC445397
EST:     GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTC                         AGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
genomic: GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTCgtaatctctc ... tgatgtaaagAGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
EST: gi|100384546|gb|BY987405.1|BY987405
EST:     GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTC                         AGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
genomic: GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTCgtaatctctc ... tgatgtaaagAGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
EST: gi|100426595|gb|BY977307.1|BY977307
EST:     GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTC                         AGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
genomic: GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTCgtaatctctc ... tgatgtaaagAGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
EST: gi|18330405|gb|BJ162411.1|BJ162411
EST:     GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTC                         AGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
genomic: GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTCgtaatctctc ... tgatgtaaagAGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
EST: gi|208397735|gb|DC912532.1|DC912532
EST:     GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTC                         AGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
genomic: GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTCgtaatctctc ... tgatgtaaagAGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
EST: gi|100354259|gb|BY945787.1|BY945787
EST:     GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTC                         AGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
genomic: GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTCgtaatctctc ... tgatgtaaagAGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
EST: gi|100363792|gb|BY966172.1|BY966172
EST:     GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTC                         AGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
genomic: GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTCgtaatctctc ... tgatgtaaagAGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
EST: gi|100407208|gb|BY974056.1|BY974056
EST:     GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTC                         AGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
genomic: GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTCgtaatctctc ... tgatgtaaagAGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
EST: gi|100422036|gb|BY957830.1|BY957830
EST:     GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTC                         AGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
genomic: GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTCgtaatctctc ... tgatgtaaagAGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
EST: gi|67709320|gb|BJ965136.1|BJ965136
EST:     GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTC                         AGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
genomic: GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTCgtaatctctc ... tgatgtaaagAGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
EST: gi|100440883|gb|BY962371.1|BY962371
EST:     GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTC                         AGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
genomic: GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTCgtaatctctc ... tgatgtaaagAGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
EST: gi|100445033|gb|BY964332.1|BY964332
EST:     GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTC                         AGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
genomic: GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTCgtaatctctc ... tgatgtaaagAGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
EST: gi|100354013|gb|BY983424.1|BY983424
EST:     GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTC                         AGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
genomic: GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTCgtaatctctc ... tgatgtaaagAGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
EST: gi|208354965|gb|DC914229.1|DC914229
EST:     GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTC                         AGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
genomic: GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTCgtaatctctc ... tgatgtaaagAGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
EST: gi|100411934|gb|BY992412.1|BY992412
EST:     GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTC                         AGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
genomic: GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTCgtaatctctc ... tgatgtaaagAGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
EST: gi|67571756|gb|BJ944580.1|BJ944580
EST:     GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTC                         AGGATTGCAGCTCGATCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCAC
genomic: GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTCgtaatctctc ... tgatgtaaagAGGATTGCAGCTCG-TCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCAC
EST: gi|100421635|gb|BY976242.1|BY976242
EST:     GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTC                         AGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
genomic: GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTCgtaatctctc ... tgatgtaaagAGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
EST: gi|100353507|gb|BY964841.1|BY964841
EST:     GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTC                         AGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
genomic: GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTCgtaatctctc ... tgatgtaaagAGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
EST: gi|100420723|gb|BY993477.1|BY993477
EST:     GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTC                         AGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
genomic: GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTCgtaatctctc ... tgatgtaaagAGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
EST: gi|100413878|gb|BY975018.1|BY975018
EST:     GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACA---C                         --G--T-C--CTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG
genomic: GAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTCgtaatctctc ... tgatgtaaagAGGATTGCAGCTCGTCGGTGACAAGGAAGACCGGGCGAGCTCGTTGGCACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGTTCGGTGGCTGCGTTCCGGACCAGTATGCTGTTTGTTTTCTCATTCTGAAACAAAGAACAGGCTGAAACATATTGGAGTCTCCTTCGTACACACGTCgtaatctctcatgccctcgctctctccccctctctctctctctccagctccccgtcaattgcgatctctatcttgttgcagtattcgaacgggtatttaa

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG