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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCGGCGCTGTTTGGGCTGGAGACGCAAATGCGTCAGATGCTGGGCCGGACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAGgtgggttcctgtgtctttaggtctgagctgcaagtttgcctcgtttgattttgtgtagtttttaattatgccaattgccatggaattgagtcaataatgc...

Basic information

species Physcomitrella patens
transcript PP1S241_40V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100383502|gb|BY950286.1|BY950286
EST:     ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAG                         GTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
genomic: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAGgtgggttcct ... actgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
EST: gi|208380368|gb|DC907693.1|DC907693
EST:     ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAG                         GTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGANCTCAAA
genomic: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAGgtgggttcct ... actgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
EST: gi|100374333|gb|BY985757.1|BY985757
EST:     ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAG                         GTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
genomic: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAGgtgggttcct ... actgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
EST: gi|208346332|gb|DC912767.1|DC912767
EST:     ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAG                         GTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
genomic: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAGgtgggttcct ... actgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
EST: gi|162165351|gb|FC341970.1|FC341970
EST:     ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAG                         GTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
genomic: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAGgtgggttcct ... actgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
EST: gi|162254003|gb|FC430637.1|FC430637
EST:     ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAG                         GTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
genomic: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAGgtgggttcct ... actgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
EST: gi|100445028|gb|BY964327.1|BY964327
EST:     ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAG                         GTCTTTCGAGGAAGACTTCANGAAAACGGGATTGTCAACCATGAGCTCAAA
genomic: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAGgtgggttcct ... actgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
EST: gi|100403657|gb|BY955036.1|BY955036
EST:     ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAG                         GTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
genomic: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAGgtgggttcct ... actgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
EST: gi|162189095|gb|FC365213.1|FC365213
EST:     ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAG                         GTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
genomic: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAGgtgggttcct ... actgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
EST: gi|208390678|gb|DC937834.1|DC937834
EST:     ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAG                         GTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
genomic: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAGgtgggttcct ... actgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
EST: gi|100440818|gb|BY980638.1|BY980638
EST:     ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAG                         GTCTTTCGAGGAAGACTTCAGAAAAACGGGATTGTCAACCATGAGCTCAAA
genomic: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAGgtgggttcct ... actgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
EST: gi|100373420|gb|BY949317.1|BY949317
EST:     ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAG                         GTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
genomic: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAGgtgggttcct ... actgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
EST: gi|208384653|gb|DC907112.1|DC907112
EST:     ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAG                         GTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
genomic: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAGgtgggttcct ... actgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA