1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CCATGCCTGGGCAGCTGAATCTAGACGAGACTCCAACGTGGGGGTCGCGGAGCGTTGATGTGTATGAGAAAATTGAGCAGATTGGAGAGGGGACTTATGGgtgcggtgatctctccttgcttctttttattttgtttgtttgggattgcttttcatggatatgtacaactacaaaaaaaatcttaggattttgcggaagttctttttcttttgcag
species | Physcomitrella patens |
transcript | PP1S235_102V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGCGTTGATGTGTATGAGAAAATTGAGCAGATTGGAGAGGGGACTTATGG GCAAGTTTACATGGCGAAAGACAAAGTTACGGGCGAAGTTGTTGCGCTGAAEST: gi|100372101|gb|BY967706.1|BY967706
genomic: AGCGTTGATGTGTATGAGAAAATTGAGCAGATTGGAGAGGGGACTTATGGgtgcggtgat ... tcttttgcagGCAAGTTTACATGGCGAAAGACAAAGTTACGGGCGAAGTTGTTGCGCTGAA
EST: AGCGTTGATGTGTATGAGAAAATTGAGCAGATTGGAGAGGGGACTTATGG GCAAGTTTACATGGCGAAAGACAAAGTTACGGGCGAAGTTGTTGCGCTGAAEST: gi|67574019|gb|BJ946843.1|BJ946843
genomic: AGCGTTGATGTGTATGAGAAAATTGAGCAGATTGGAGAGGGGACTTATGGgtgcggtgat ... tcttttgcagGCAAGTTTACATGGCGAAAGACAAAGTTACGGGCGAAGTTGTTGCGCTGAA
EST: AGCGTTGATGTGTATGAGAAAATTGAGCAGATTGGAGAGGGGACTTATGG GCAAGTTTACATGGCGAAAGACAAAGTTACGGGCGAAGTTGTTGCGCTGAAEST: gi|18373677|gb|BJ205255.1|BJ205255
genomic: AGCGTTGATGTGTATGAGAAAATTGAGCAGATTGGAGAGGGGACTTATGGgtgcggtgat ... tcttttgcagGCAAGTTTACATGGCGAAAGACAAAGTTACGGGCGAAGTTGTTGCGCTGAA
EST: AGCGTTGATGTGTATGAGAAAATTGAGCAGATTGGAGAGGGGACTTATGG GCAAGTTTACATGGCGAAAGACAAAGTTACGGGCGAAGTTGTTGCGCTGAA
genomic: AGCGTTGATGTGTATGAGAAAATTGAGCAGATTGGAGAGGGGACTTATGGgtgcggtgat ... tcttttgcagGCAAGTTTACATGGCGAAAGACAAAGTTACGGGCGAAGTTGTTGCGCTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATGCCTGGGCAGCTGAATCTAGACGAGACTCCAACGTGGGGGTCGCGGAGCGTTGATGTGTATGAGAAAATTGAGCAGATTGGAGAGGGGACTTATGGgtgcggtgatctctccttgcttctttttattttgtttgtttgggattgcttttcatggatatgtacaactacaaaaaaaatcttaggattttgcggaagttctttttcttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG