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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCACCGCGCATTCCCTTTTGCCTTGCTGCTGTCACAGCTCGAGCGGTAGCGAGGCCAGTTGAGGCGATTTCTGAACGTAATCACGATGgtaagtgcgaaactccttcatgattgtgtgtggagttttgttcttgtcgccgatggtgctgtgtcagactcaatttaatgttattatatatctcacagaa...

Basic information

species Physcomitrella patens
transcript PP1S22_326V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18368682|gb|BJ200767.1|BJ200767
EST:     TCGAGCGGTAGCGAGGCCAGTTGAGGCGATTTCTGAACGTAATCACGATG                         GTGAACGTTCCGAAAACCAAGAAGTCCTTCTGTCCAGGGAAGGCGTGCAAG
genomic: TCGAGCGGTAGCGAGGCCAGTTGAGGCGATTTCTGAACGTAATCACGATGgtaagtgcga ... ggttttctagGTGAACGTTCCGAAAACCAAGAAGTCCTTCTGTCCAGGGAAGGCGTGCAAG
EST: gi|162262338|gb|FC437665.1|FC437665
EST:     TCGAGCGGTAGCGAGGCCAGTTGAGGCGATTTCTGAACGTAATCACGATG                         GTGAACGTTCCGAAAACCAAGAAGTCCTTCTGTCCAGGGAAGGCGTGCAAG
genomic: TCGAGCGGTAGCGAGGCCAGTTGAGGCGATTTCTGAACGTAATCACGATGgtaagtgcga ... ggttttctagGTGAACGTTCCGAAAACCAAGAAGTCCTTCTGTCCAGGGAAGGCGTGCAAG
EST: gi|162228552|gb|FC404150.1|FC404150
EST:     TCGAGCGGTAGCGAGGCCAGTTGAGGCGATTTCTGAACGTAATCACGATG                         GTGAACGTTCCGAAAACCAAGAAGTCCTTCTGTCCAGGGAAGGCGTGCAAG
genomic: TCGAGCGGTAGCGAGGCCAGTTGAGGCGATTTCTGAACGTAATCACGATGgtaagtgcga ... ggttttctagGTGAACGTTCCGAAAACCAAGAAGTCCTTCTGTCCAGGGAAGGCGTGCAAG
EST: gi|18335674|gb|BJ167694.1|BJ167694
EST:     TCGAGCGGTAGCGAGGCCAGTTGAGGCGATTTCTGAACGTAATCACGATG                         GTGAACGTTCCGAAAACCAAGAAGTCCTTCTGTCCAGGGAAGGCGTGCAAG
genomic: TCGAGCGGTAGCGAGGCCAGTTGAGGCGATTTCTGAACGTAATCACGATGgtaagtgcga ... ggttttctagGTGAACGTTCCGAAAACCAAGAAGTCCTTCTGTCCAGGGAAGGCGTGCAAG
EST: gi|18360736|gb|BJ192799.1|BJ192799
EST:     TCGAGCGGTAGCGAGGCCAGTTGAGGCGATTTCTGAACGTAATCACGATG                         GTGAACGTTCCGAAAACCAAGAAGTCCTTCTGTCCAGGGAAGGCGTGCAAG
genomic: TCGAGCGGTAGCGAGGCCAGTTGAGGCGATTTCTGAACGTAATCACGATGgtaagtgcga ... ggttttctagGTGAACGTTCCGAAAACCAAGAAGTCCTTCTGTCCAGGGAAGGCGTGCAAG
EST: gi|162225415|gb|FC401193.1|FC401193
EST:     GAACGTAATCACGATG                         GTGAACGTTCCGAAAACCAAGAAGTCCTTCTGTCCAGGGAAGGCGTGCAAG
genomic: GAACGTAATCACGATGgtaagtgcga ... ggttttctagGTGAACGTTCCGAAAACCAAGAAGTCCTTCTGTCCAGGGAAGGCGTGCAAG
EST: gi|67575316|gb|BJ948140.1|BJ948140
EST:     TCGAGCGGTAGCGAGGCCAGTTGAGGCGATTTCTGAACGTAATCACGATG                         GTGAACGTTCCGAAAACCAAGAAGTCCTTCTGTCCAGGGAAGGCGTGCAAG
genomic: TCGAGCGGTAGCGAGGCCAGTTGAGGCGATTTCTGAACGTAATCACGATGgtaagtgcga ... ggttttctagGTGAACGTTCCGAAAACCAAGAAGTCCTTCTGTCCAGGGAAGGCGTGCAAG
EST: gi|67698779|gb|BJ959012.1|BJ959012
EST:     TCGAGCGGTAGCGAGGCCAGTTGAGGCGATTTCTGAACGTAATCACGATG                         GTGAACGTTCCGAAAACCAAGAAGTCCTTCTGTCCAGGGAAGGCGTGCAAG
genomic: TCGAGCGGTAGCGAGGCCAGTTGAGGCGATTTCTGAACGTAATCACGATGgtaagtgcga ... ggttttctagGTGAACGTTCCGAAAACCAAGAAGTCCTTCTGTCCAGGGAAGGCGTGCAAG
EST: gi|18327408|gb|BJ159410.1|BJ159410
EST:     TCGAGCGGTAGCGAGGCCAGTTGAGGCGATTTCTGAACGTAATCACGATG                         GTGAACGTTCCGAAAACCAAGAAGTCCTTCTGTCCAGGGAAGGCGTGCAAG
genomic: TCGAGCGGTAGCGAGGCCAGTTGAGGCGATTTCTGAACGTAATCACGATGgtaagtgcga ... ggttttctagGTGAACGTTCCGAAAACCAAGAAGTCCTTCTGTCCAGGGAAGGCGTGCAAG