1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGTCAGCCGCGGCGAGTCACCTGTAAAGTTACCCAGTCATGACACTGCTTGCTATCGCAGCAAGAGGAAGCAGCAGGATCCGTCGTCTCCAGACCCTAAGgtaataatatatccccacttcttgcactttgaagttcatttctctttgctcatgataaaaataaagatatacgacaaaacaaagatgatcccggcagtaagtatactgcactagtgaattgaacggcgtttggtggtggccgatgtctag
species | Physcomitrella patens |
transcript | PP1S226_51V6.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCTATCGCAGCAAGAGGAAGCAGCAGGATCCGTCGTCTCCAGACCCTAAG ATTTCGGAGGGTGAGGCGTCATCCAACCCTAAGCGGAGCAAAGGGGAAGCTEST: gi|162175047|gb|FC351947.1|FC351947
genomic: GCTATCGCAGCAAGAGGAAGCAGCAGGATCCGTCGTCTCCAGACCCTAAGgtaataatat ... cgatgtctagATTTCGGAGGGTGAGGCGTCATCCAACCCTAAGCGGAGCAAAGGGGAAGCT
EST: GCTATCGCAGCAAGAGGAAGCAGCAGGATCCGTCGTCTCCAGACCCTAAG ATTTCGGAGGGTGAGGCGTCATCCAACCCTAAGCGGAGCAAAGGGGAAGCTEST: gi|162178303|gb|FC354709.1|FC354709
genomic: GCTATCGCAGCAAGAGGAAGCAGCAGGATCCGTCGTCTCCAGACCCTAAGgtaataatat ... cgatgtctagATTTCGGAGGGTGAGGCGTCATCCAACCCTAAGCGGAGCAAAGGGGAAGCT
EST: GCTATCGCAGCAAGAGGAAGCAGCAGGATCCGTCGTCTCCAGACCCTAAG ATTTCGGAGGGTGAGGCGTCATCCAACCCTAAGCGGAGCAAAGGGGAAGCTEST: gi|100419435|gb|BY957574.1|BY957574
genomic: GCTATCGCAGCAAGAGGAAGCAGCAGGATCCGTCGTCTCCAGACCCTAAGgtaataatat ... cgatgtctagATTTCGGAGGGTGAGGCGTCATCCAACCCTAAGCGGAGCAAAGGGGAAGCT
EST: GCTATCGCAGCAAGAGGAAGCAGCAGGATCCGTCGTCTCCAGACCCTAAG ATTTCGGAGGGTGAGGCGTCATCCAACCCTAAGCGGAGCAAAGGGGAAGCTEST: gi|162255236|gb|FC431546.1|FC431546
genomic: GCTATCGCAGCAAGAGGAAGCAGCAGGATCCGTCGTCTCCAGACCCTAAGgtaataatat ... cgatgtctagATTTCGGAGGGTGAGGCGTCATCCAACCCTAAGCGGAGCAAAGGGGAAGCT
EST: GCTATCGCAGCAAGAGGAAGCAGCAGGATCCGTCGTCTCCAGACCCTAAG ATTTCGGAGGGTGAGGCGTCATCCAACCCTAAGCGGAGCAAAGGGGAAGCT
genomic: GCTATCGCAGCAAGAGGAAGCAGCAGGATCCGTCGTCTCCAGACCCTAAGgtaataatat ... cgatgtctagATTTCGGAGGGTGAGGCGTCATCCAACCCTAAGCGGAGCAAAGGGGAAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTCAGCCGCGGCGAGTCACCTGTAAAGTTACCCAGTCATGACACTGCTTGCTATCGCAGCAAGAGGAAGCAGCAGGATCCGTCGTCTCCAGACCCTAAGgtaataatatatccccacttcttgcactttgaagttcatttctctttgctcatgataaaaataaagatatacgacaaaacaaagatgatcccggcagtaagtatactgcactagtgaattgaacggcgtttggtggtggccgatgtctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA