1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCTTCTCTTTGGCTGGGTTTTGCTTGGAGCACCCTCGTCGCACTCAATTCTCCACCATGgtatcgccgagttctctcatttgtgtctcctctttgcaaacacaggtcccgttatatattgctcatcgtctgtctcaaaccctaattttacaatgtagacgtgatcaattttattttcgcgtgtgcag
species | Physcomitrella patens |
transcript | PP1S223_96V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCTTGGAGCGCCCTCGTCGCACTCAATTCTCCACCATG GCGGACGCCGCGGAAGTTGAGATTGCCCAACCCAAGAAGAGAACATTTAAGEST: gi|37832564|gb|BJ590576.1|BJ590576
genomic: GCTTGGAGCACCCTCGTCGCACTCAATTCTCCACCATGgtatcgccga ... gcgtgtgcagGCGGACGCCGCGGAAGTTGAGATTGCCCAACCCAAGAAGAGAACATTTAAG
EST: TGGCTGGGTTTTGCTTGGAGCACCCTCGTCGCACTCAATTCTCCACCATG GCGGACGCCGCGGAAGTTGAGATTGCCCAACCCAAGAAGAGAACATTTAAGEST: gi|18355623|gb|BJ187682.1|BJ187682
genomic: TGGCTGGGTTTTGCTTGGAGCACCCTCGTCGCACTCAATTCTCCACCATGgtatcgccga ... gcgtgtgcagGCGGACGCCGCGGAAGTTGAGATTGCCCAACCCAAGAAGAGAACATTTAAG
EST: TGGCTGGGTTTTGCTTGGAGCACCCTCGTCGCACTCAATTCTCCACCATG GCGGACGCCGCGGAAGTTGAGATTGCCCAACCCAAGAAGAGAACATTTAAGEST: gi|162263922|gb|FC438684.1|FC438684
genomic: TGGCTGGGTTTTGCTTGGAGCACCCTCGTCGCACTCAATTCTCCACCATGgtatcgccga ... gcgtgtgcagGCGGACGCCGCGGAAGTTGAGATTGCCCAACCCAAGAAGAGAACATTTAAG
EST: TTTTGCTTGGAGCACCCTCGTCGCACTCAATTCTCCACCATG GCGGACGCCGCGGAAGTTGAGATTGCCCAACCCAAGAAGAGAACATTTAAGEST: gi|18339647|gb|BJ171674.1|BJ171674
genomic: TTTTGCTTGGAGCACCCTCGTCGCACTCAATTCTCCACCATGgtatcgccga ... gcgtgtgcagGCGGACGCCGCGGAAGTTGAGATTGCCCAACCCAAGAAGAGAACATTTAAG
EST: TGGCTGGGTTTTGCTTGGAGCACCCTCGTCGCACTCAATTCTCCACCATG GCGGACGCCGCGGAAGTTGAGATTGCCCAACCCAAGAAGAGAACATTTAAG
genomic: TGGCTGGGTTTTGCTTGGAGCACCCTCGTCGCACTCAATTCTCCACCATGgtatcgccga ... gcgtgtgcagGCGGACGCCGCGGAAGTTGAGATTGCCCAACCCAAGAAGAGAACATTTAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTCTCTTTGGCTGGGTTTTGCTTGGAGCACCCTCGTCGCACTCAATTCTCCACCATGgtatcgccgagttctctcatttgtgtctcctctttgcaaacacaggtcccgttatatattgctcatcgtctgtctcaaaccctaattttacaatgtagacgtgatcaattttattttcgcgtgtgcag
- - - - - - - - - - - TTGGAG
- - - - - - - - - - - - GGAGCA