Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTCTTTCTCTGCTTTGCGCTTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctgatctgcctcgtccttgtcattgtgctgctcttcttggctcttattcagtgctatcttcgtgttcgtgaaattttatgtttagggtttacgtctttgtgactgaaagttggttgtgtgtgtttccgatgttggcag

Basic information

species Physcomitrella patens
transcript PP1S215_71V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18360229|gb|BJ192291.1|BJ192291
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|19777657|gb|BQ039210.1|BQ039210
EST:     GCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: GCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|208386167|gb|DC949078.1|DC949078
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|18341741|gb|BJ173776.1|BJ173776
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|208357154|gb|DC926529.1|DC926529
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|18332399|gb|BJ164412.1|BJ164412
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|37842872|gb|BJ600880.1|BJ600880
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|67703682|gb|BJ963915.1|BJ963915
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|37852794|gb|BJ610802.1|BJ610802
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|67701937|gb|BJ962170.1|BJ962170
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCCCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|208344396|gb|DC912755.1|DC912755
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|67727082|gb|BJ977341.1|BJ977341
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|162262789|gb|FC439039.1|FC439039
EST:     CGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: CGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|162219637|gb|FC395633.1|FC395633
EST:     CGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: CGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|18344316|gb|BJ176356.1|BJ176356
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|67718659|gb|BJ968918.1|BJ968918
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         A
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcag-
EST: gi|67718659|gb|BJ968918.1|BJ968918
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         A
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcag-
EST: gi|162225276|gb|FC402042.1|FC402042
EST:     CCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: CCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|18368996|gb|BJ201081.1|BJ201081
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|18359385|gb|BJ191446.1|BJ191446
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|208361710|gb|DC934950.1|DC934950
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|37853594|gb|BJ611602.1|BJ611602
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|37823511|gb|BJ581577.1|BJ581577
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|162240837|gb|FC417508.1|FC417508
EST:     GCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: GCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|37850282|gb|BJ608290.1|BJ608290
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|208392628|gb|DC933986.1|DC933986
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|162237025|gb|FC413184.1|FC413184
EST:     GCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: GCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|7286711|gb|AW599198.1|AW599198
EST:     CCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: CCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|162240836|gb|FC417507.1|FC417507
EST:     GCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: GCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|67575791|gb|BJ948615.1|BJ948615
EST:     TTTC-CCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|162213507|gb|FC389379.1|FC389379
EST:     GCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: GCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|18369441|gb|BJ201528.1|BJ201528
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|162225277|gb|FC402043.1|FC402043
EST:     CCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: CCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|162219636|gb|FC395632.1|FC395632
EST:     CGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: CGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|208356836|gb|DC926847.1|DC926847
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|37850750|gb|BJ608758.1|BJ608758
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|162264508|gb|FC440843.1|FC440843
EST:     TCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|208370042|gb|DC948123.1|DC948123
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|67724116|gb|BJ974375.1|BJ974375
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|162213506|gb|FC389378.1|FC389378
EST:     GCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: GCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|162229537|gb|FC405871.1|FC405871
EST:     CACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: CACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|208346845|gb|DC913084.1|DC913084
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|67720427|gb|BJ970686.1|BJ970686
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCCCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|18371917|gb|BJ203519.1|BJ203519
EST:     TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: TTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
EST: gi|162237026|gb|FC413185.1|FC413185
EST:     GCTGCGTTTCCTTGCTGCTCAGTCACCATG                         TCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC
genomic: GCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 20

TACTCTTTCTCTGCTTTGCGCTTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctga ... atgttggcagTCGCTCATTGCGGGCGAGGAGTTCCAGCACATTCTTCGTGTTCTGAATACCAACGTCGATGGGCGTCAGAAGATTATGTTTGCCCTAACCTCCATCAAGG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACTCTTTCTCTGCTTTGCGCTTTCACCATCGCCCCTCTGTGCTGCGTTTCCTTGCTGCTCAGTCACCATGgtgtgtctgatctgcctcgtccttgtcattgtgctgctcttcttggctcttattcagtgctatcttcgtgttcgtgaaattttatgtttagggtttacgtctttgtgactgaaagttggttgtgtgtgtttccgatgttggcag

- - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT