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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACCCGGACAATTTGAACGAGAATGTGAAGAAGACGGTGTATGCCGTGCGGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggttggggtctttggttgaattttcatggatttggggttgtctgaggtggtttttcgtgtgtggtgtgttgacgagttttgatctgcgctgagtggagcgttgttgttgttgccgttgttttcttttggagttcatggcag

Basic information

species Physcomitrella patens
transcript PP1S215_28V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162184664|gb|FC361902.1|FC361902
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|162207832|gb|FC384125.1|FC384125
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|100388003|gb|BY988476.1|BY988476
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|208400418|gb|DC908645.1|DC908645
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|100371525|gb|BY968022.1|BY968022
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|100395972|gb|BY972219.1|BY972219
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|162166511|gb|FC343208.1|FC343208
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|100448661|gb|CJ972960.1|CJ972960
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|100393479|gb|BY953418.1|BY953418
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|162214587|gb|FC390618.1|FC390618
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|100417952|gb|BY993265.1|BY993265
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|162155910|gb|FC332459.1|FC332459
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|162151638|gb|FC327767.1|FC327767
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|162153918|gb|FC329425.1|FC329425
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|18346385|gb|BJ178428.1|BJ178428
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|100392222|gb|BY953255.1|BY953255
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAGG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|100384799|gb|BY969534.1|BY969534
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|162186627|gb|FC363599.1|FC363599
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|162152068|gb|FC328463.1|FC328463
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|100437194|gb|BY961398.1|BY961398
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|162155922|gb|FC332471.1|FC332471
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|100360719|gb|BY965863.1|BY965863
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|100441845|gb|BY981068.1|BY981068
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|100448584|gb|CJ972883.1|CJ972883
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|100448006|gb|CJ972305.1|CJ972305
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|100402755|gb|BY973340.1|BY973340
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|18345854|gb|BJ177897.1|BJ177897
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|162177756|gb|FC354590.1|FC354590
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|162178101|gb|FC354403.1|FC354403
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|162186048|gb|FC361876.1|FC361876
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|162161643|gb|FC339058.1|FC339058
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|100390035|gb|BY989115.1|BY989115
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|100441603|gb|BY981025.1|BY981025
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|18374736|gb|BJ206314.1|BJ206314
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|100425083|gb|BY976964.1|BY976964
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCGATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|100360291|gb|BY966102.1|BY966102
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|162181637|gb|FC357939.1|FC357939
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|100418930|gb|BY975809.1|BY975809
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|100398360|gb|BY972565.1|BY972565
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
EST: gi|100437396|gb|BY961497.1|BY961497
EST:     GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT
genomic: GGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 35 (downstream exon)
Score: 63

GGACCCGGACAATTTGAACGAGAATGTGAAGAAGACGGTGTATGCCGTGCGGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggtt ... ttcatggcagATCATTTTCACCAATGTCGGCAACCCGCATGCTCTTGGTCAGAAGCCTCTTACATTCCCTCGCCAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGACCCGGACAATTTGAACGAGAATGTGAAGAAGACGGTGTATGCCGTGCGGGGAGAGCTCTACCTGCGCGCCTCGGAGCTGCAGAAAGAGGGCAAGAAGgtgcagggttggggtctttggttgaattttcatggatttggggttgtctgaggtggtttttcgtgtgtggtgtgttgacgagttttgatctgcgctgagtggagcgttgttgttgttgccgttgttttcttttggagttcatggcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG