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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAGCGAGAGCTGCGACGACGTCTCTGCCAGCATGAACCGGGAGAAGCTCATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctggattcaattcccttcactgtggtgatggttgttgttgttgttgtcgttgattctcattactgtggattgagtcctgcgtcgcttggtgtgg...

Basic information

species Physcomitrella patens
transcript PP1S213_68V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S213_68V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G041881_T01 (Zea mays), 5'ss of exon 2
CTAGCGAGAGCTGCGACGACGTCTCTGCCAGCATGAACCGGGAGAAGCTCATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctggattcaattccc-ttcactgtggtgatggttgttgttgttgttgtcgttgattctcattactgtggattgagtcctgcgtcgcttggtgtgg
                                |||||   ||||||||||| ||||||||| ||||| ||||||||||| |||||||||||| |  | ||||    |    | |   |||  | | ||| |||| | ||  | | ||   ||    || |      | |  || |  |   |  |  |   ||     |  
--------------------------------ATGAATGTGGAGAAGCTCAAGAAGATGGCGGGTGCTGTGCGCACTGGAGGAAAGGGCAGCATGCGCAGgtgcctcatcttcctcctcctgtcctctgcggtggtagtgatcggtgcatttacttttcacctagctaatcgtaggctacttgatctgagcctgcacatt-

upper sequence: PP1S213_68V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G023242_T05 (Zea mays), 5'ss of exon 2
CTAGCGAGAGCTGCGACGACGTCTCTGCCAGCATGAACCGGGAGAAGCTCATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctggattcaattcccttcactgtggtgatggttgttgttgt-tgttgtcgttgattc--tcatt--actgtggattgagtcctgcgtcgcttggtgtgg
                                ||||||  ||||| ||||||||||||||| || ||||| ||||| ||||| ||||||| | |  | |||||  | ||      |    ||   || | |      ||||  |  | ||| || |   |  |  |  ||  | |    | ||||   || ||     |      
--------------------------------ATGAACAAGGAGAGGCTCATGAAGATGGCCGGCGCCGTCCGCACCGGCGGCAAGGGCACCATGCGCAGgta--ggtgttgctgaccagctcggctctcgcatgtcttgtgttcatatgtggttgcgaagccagtggttgaattagaaaatgagctttgggttttcag------

upper sequence: PP1S213_68V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G023242_T04 (Zea mays), 5'ss of exon 1
-CTAGCGAGAGCTGCGACGACGTCTCTGCCAGCATGAACCGGGAGAAGCTCATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctggattcaattcccttcactgtggtgatggttgttgttgt-tgttgtcgttgattc--tcatt--actgtggattgagtcctgcgtcgcttggtgtgg
 || |   |  | |   ||   | |    ||| ||||||  ||||| ||||||||||||||| || ||||| ||||| ||||| ||||||| | |  | |||||  | ||      |    ||   || | |      ||||  |  | ||| || |   |  |  |  ||  | |    | ||||   || ||     |      
ACTGGTTGGTTCCGTTCCGTTCTGTTCCGCAG-ATGAACAAGGAGAGGCTCATGAAGATGGCCGGCGCCGTCCGCACCGGCGGCAAGGGCACCATGCGCAGgta--ggtgttgctgaccagctcggctctcgcatgtcttgtgttcatatgtggttgcgaagccagtggttgaattagaaaatgagctttgggttttcag------

upper sequence: PP1S213_68V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: AT1G17880.1 (Arabidopsis thaliana), 5'ss of exon 2
CTAGCGAGAGCTGCGACGACGTCTCTGCCAGCATGAACCGGGAGAAGCTCATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgta--atgctggattcaattcccttcactgtggtgatggttgttgttgttgttgtcgttgattctcattactgtggattgagtcctgcgtcgcttggtgtgg
                                |||||  |||||||| | ||||||||||||  | |||| ||||||||||||||||| |  |||||||||||    | |  ||||||     |||| |||    ||  ||    ||  |  | |    ||||    |||   || |   | ||     |  ||||  |   
--------------------------------ATGAATAGGGAGAAGTTGATGAAGATGGCTAATACCGTCCGCACTGGCGGAAAGGGTACTGTCAGAAGgtatagagttttattcaaccaatttcattgtt-caatacttagcatt--tactat----gatttgtgtta---tgaaaccattcgatttttacttgcag---

upper sequence: PP1S213_68V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: Vv17s0053g00620.t01 (Vitis vinifera), 5'ss of exon 2
CTAGCGAGAGCTGCGACGACGTCTCTGCCAGCATGAACCGGGAGAAGCTCATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgt--aatgctggattcaattcccttcactgtggtgatggttgttgttgttgttgtcgttgattctcattactgtggattgagtcctgcgtcgcttggtgtgg-
                                |||||  |||||||||| ||||||||||||||||| || ||||| || |||||||| ||| | |||||||  ||  |    ||| | |  |     |||        |  ||  |  | || | |  | ||    ||  | |||   | ||   | |  |   || | || 
--------------------------------ATGAATAGGGAGAAGCTTATGAAGATGGCTGGTGCAGTTCGCACCGGTGGAAAGGGTAGCATGAGAAGgtgcaaaaccctgttccagtgtcccacttgtccactcaataattcattcttttattg--ggtttgggttgtt-tggggggggtgggggggggggggggggggg

upper sequence: PP1S213_68V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ08565 (Selaginella moellendorffii), 5'ss of exon 1
-CTAGCGAGAGCTGCGACGACGTCTCTGCCAGCATGAACCGGGAGAAGCTCATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaat---gctggatt---caattcccttcactgtggtgatggttgttgttgttgttgtcgttgattctcattactgtggattgagtcctgcgtcgcttggtgtgg
  |    |    |  |  |  |  | ||| || ||||| || |||||||| |||||||||||| |||| |||||||| || ||||||||||  || || ||||| |   || | |||     ||| | ||   || | |||||| | || |  ||  || ||  |                                          
ATTTCTCACTCGTTTGCTGCGGATTTTGCTAG-ATGAATCGAGAGAAGCTGATGAAGATGGCTAGTGCTGTGCGCACCGGTGGAAAGGGCACAGTGAGGAGgtatttcggcggcattggatgatttcgttgtttgagctgatggat-ttttgttttctggcgcag------------------------------------------

upper sequence: PP1S213_68V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ19629 (Selaginella moellendorffii), 5'ss of exon 1
---CTAGCGAGAGCTGCGACGACGTCTCTGCCAGCATGAACCGGGAGAAGCTCATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaat---gctggatt--caattcccttcactgtggtgatggttgttgttgttgttgtcgttgattctcattactgtggattgagtcctgcgtcgcttggtgtgg
   ||  |   |  |||  ||  |  | |||||| ||||| || |||||||| |||||||||||| |||| |||||||| || ||||||||||  || || ||||| |   || | |||    ||| | ||   || | |||||| | || |  ||  || ||  |                                          
TTTCTCACTC-ATTTGCCGCGG-GATTTTGCCAG-ATGAATCGAGAGAAGCTGATGAAGATGGCTAGTGCTGTGCGCACCGGTGGAAAGGGCACAGTGAGGAGgtatttcggcggcattggtgatttcgttgtttgagctgatggat-ttttgttttctggcgcag------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208348717|gb|DC926392.1|DC926392
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|67709655|gb|BJ965471.1|BJ965471
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|162248112|gb|FC419701.1|FC419701
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|162261267|gb|FC437284.1|FC437284
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|162245442|gb|FC421344.1|FC421344
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|162201863|gb|FC377797.1|FC377797
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|162201226|gb|FC378461.1|FC378461
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|67722793|gb|BJ973052.1|BJ973052
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAGGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|37850633|gb|BJ608641.1|BJ608641
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|67710220|gb|BJ965894.1|BJ965894
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|37836700|gb|BJ594708.1|BJ594708
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|18369319|gb|BJ201405.1|BJ201405
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|162209748|gb|FC385682.1|FC385682
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|162201862|gb|FC377796.1|FC377796
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|162279241|gb|FC455788.1|FC455788
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|67723731|gb|BJ973990.1|BJ973990
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|67704278|gb|BJ964511.1|BJ964511
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAGGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|162279606|gb|FC455358.1|FC455358
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|162279240|gb|FC455787.1|FC455787
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|37839915|gb|BJ597923.1|BJ597923
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTTACCACTACCGATGACAAGAGGTTGC
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAAC-TACCACTACCGATGACAAGAGGTTGC
EST: gi|18362681|gb|BJ194752.1|BJ194752
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|162201020|gb|FC378151.1|FC378151
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|162248113|gb|FC419702.1|FC419702
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|100449281|gb|CJ973580.1|CJ973580
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|162274339|gb|FC450307.1|FC450307
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|37844027|gb|BJ602035.1|BJ602035
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|162262878|gb|FC438764.1|FC438764
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|18357333|gb|BJ189392.1|BJ189392
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|67724158|gb|BJ974417.1|BJ974417
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|19789623|gb|BQ041415.1|BQ041415
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|162205674|gb|FC381889.1|FC381889
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|67724455|gb|BJ974714.1|BJ974714
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|208344777|gb|DC912611.1|DC912611
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|162271998|gb|FC448416.1|FC448416
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|162279605|gb|FC455357.1|FC455357
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|162205675|gb|FC381890.1|FC381890
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
EST: gi|18358769|gb|BJ190828.1|BJ190828
EST:     ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAG                         AAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA
genomic: ATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 82

CTAGCGAGAGCTGCGACGACGTCTCTGCCAGCATGAACCGGGAGAAGCTCATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctgg ... attttggcagAAAGCATAAAGCGGCCCACAAAACTACCACTACCGATGACAAGAGGTTGCAAAACACTCTGAAGAGACTTGGTGTAAATACTATTCCTGGCATTGAGGAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTAGCGAGAGCTGCGACGACGTCTCTGCCAGCATGAACCGGGAGAAGCTCATGAAGATGGCTGGTGCCGTGCGCACTGGCGGAAAGGGCAGCGTCAGAAGgtaatgctggattcaattcccttcactgtggtgatggttgttgttgttgttgtcgttgattctcattactgtggattgagtcctgcgtcgcttggtgtgg

- - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG