1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCACGGGGATCACGCCTCGCACAAGAAGGTGATTGATCTCGTGCGGGAGTACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAGgtttgtagtctttatcttttaactctggtttttgtcatggggtgtttgtttggcactgtgcaatgttagtcgtggttaatccgtttgtaaatccttagattcccttaatttttcatctctctcctgaaaagtgaagttctgaatctgtattctacag
species | Physcomitrella patens |
transcript | PP1S205_25V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAG GGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAGEST: gi|100407600|gb|BY991774.1|BY991774
genomic: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAGgtttgtagtc ... tattctacagGGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAG
EST: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAG GGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAGEST: gi|162178857|gb|FC354789.1|FC354789
genomic: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAGgtttgtagtc ... tattctacagGGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAG
EST: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAG GGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAGEST: gi|162169105|gb|FC345995.1|FC345995
genomic: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAGgtttgtagtc ... tattctacagGGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAG
EST: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAG GGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAGEST: gi|162156500|gb|FC332108.1|FC332108
genomic: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAGgtttgtagtc ... tattctacagGGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAG
EST: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAG GGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAGEST: gi|208350245|gb|DC901615.1|DC901615
genomic: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAGgtttgtagtc ... tattctacagGGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAG
EST: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAG GGCCCAGAGGTTANGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAGEST: gi|208360056|gb|DC939332.1|DC939332
genomic: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAGgtttgtagtc ... tattctacagGGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAG
EST: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAG GGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAGEST: gi|208374258|gb|DC941127.1|DC941127
genomic: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAGgtttgtagtc ... tattctacagGGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAG
EST: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAG GGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAGEST: gi|162278586|gb|FC454048.1|FC454048
genomic: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAGgtttgtagtc ... tattctacagGGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAG
EST: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAG GGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAGEST: gi|100359011|gb|BY946801.1|BY946801
genomic: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAGgtttgtagtc ... tattctacagGGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAG
EST: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAG GGCCCAGAGGGTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAAEST: gi|162187679|gb|FC364630.1|FC364630
genomic: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAGgtttgtagtc ... tattctacagGGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAG
EST: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAG GGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAGEST: gi|208367109|gb|DC935937.1|DC935937
genomic: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAGgtttgtagtc ... tattctacagGGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAG
EST: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAG GGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAGEST: gi|208374609|gb|DC931962.1|DC931962
genomic: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAGgtttgtagtc ... tattctacagGGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAG
EST: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAG GGCCCAGAGGTTANGANTGGAGEST: gi|162179457|gb|FC355457.1|FC355457
genomic: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAGgtttgtagtc ... tattctacagGGCCCAGAGGTTAGGAGTGGAG
EST: CTTGATACCAAG GGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAGEST: gi|162159393|gb|FC334661.1|FC334661
genomic: CTTGATACCAAGgtttgtagtc ... tattctacagGGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAG
EST: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAG GGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAGEST: gi|162181032|gb|FC358686.1|FC358686
genomic: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAGgtttgtagtc ... tattctacagGGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAG
EST: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAG GGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAG
genomic: ACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAGgtttgtagtc ... tattctacagGGCCCAGAGGTTAGGAGTGGAGACTTGCCACAACCTATTATGCTAAAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACGGGGATCACGCCTCGCACAAGAAGGTGATTGATCTCGTGCGGGAGTACAACAAGGAAGCGAACGCGAATGTCATTGCCCTCATGCTTGATACCAAGgtttgtagtctttatcttttaactctggtttttgtcatggggtgtttgtttggcactgtgcaatgttagtcgtggttaatccgtttgtaaatccttagattcccttaatttttcatctctctcctgaaaagtgaagttctgaatctgtattctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA