1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CTTGGCAGCAAAGGTTTGCTCTTGGTTGCGATTCCACACTGTTTCTGGCGCTCAGGGGTAGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACGgtgagttggttcacgtgcgtccctcatagctatagcccgagttgggttgcagattgagtagggttggatgcgagctatagggcttattgagagtggttgaggaattggattcgttgcatactgtatattcaaagtggacttagtttgcgtggggtgagtatcacttacggtggcgagggatggcctttggggtag
species | Physcomitrella patens |
transcript | PP1S204_22V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCAGGGGTAGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACG GAGCTGGTATATGCGGAGTCCAACAGAAGCTTGTGCAGGACTCTTGAGTTGEST: gi|18328336|gb|BJ160340.1|BJ160340
genomic: CTCAGGGGTAGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACGgtgagttggt ... tttggggtagGAGCTGGTATATGCGGAGTCCAACAGAAGCTTGTGCAGGACTCTTGAGTTG
EST: CTCAGGGGTAGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACG GAGCTGGTATATGCGGAGTCCAACAGAAGCTTGTGCAGGACTCTTGAGTTGEST: gi|18359914|gb|BJ191975.1|BJ191975
genomic: CTCAGGGGTAGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACGgtgagttggt ... tttggggtagGAGCTGGTATATGCGGAGTCCAACAGAAGCTTGTGCAGGACTCTTGAGTTG
EST: CTCAGGGGTAGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACG GAGCTGGTATATGCGGAGTCCAACAGAAGCTTGTGCAGGACTCTTGAGTTGEST: gi|18327270|gb|BJ159272.1|BJ159272
genomic: CTCAGGGGTAGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACGgtgagttggt ... tttggggtagGAGCTGGTATATGCGGAGTCCAACAGAAGCTTGTGCAGGACTCTTGAGTTG
EST: CTCAGGGGTAGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACG GAGCTGGTATATGCGGAGTCCAACAGAAGCTTGTGCAGGACTCTTGAGTTGEST: gi|18329206|gb|BJ161212.1|BJ161212
genomic: CTCAGGGGTAGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACGgtgagttggt ... tttggggtagGAGCTGGTATATGCGGAGTCCAACAGAAGCTTGTGCAGGACTCTTGAGTTG
EST: AGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACG GAGCTGGTATATGCGGAGTCCAACAGAAGCTTGTGCAGGACTCTTGAGTTGEST: gi|18365684|gb|BJ197761.1|BJ197761
genomic: AGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACGgtgagttggt ... tttggggtagGAGCTGGTATATGCGGAGTCCAACAGAAGCTTGTGCAGGACTCTTGAGTTG
EST: CTCAGGGGTAGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACG GAGCTGGTATATGCGGAGTCCAACAGAAGCTTGTGCAGGACTCTTGAGTTGEST: gi|18374970|gb|BJ206548.1|BJ206548
genomic: CTCAGGGGTAGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACGgtgagttggt ... tttggggtagGAGCTGGTATATGCGGAGTCCAACAGAAGCTTGTGCAGGACTCTTGAGTTG
EST: CTCAGGGGTAGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACG GAGCTGGTATATGCGGAGTCCAACAGAAGCTTGTGCAGGACTCTTGAGTTGEST: gi|100396548|gb|BY990180.1|BY990180
genomic: CTCAGGGGTAGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACGgtgagttggt ... tttggggtagGAGCTGGTATATGCGGAGTCCAACAGAAGCTTGTGCAGGACTCTTGAGTTG
EST: CTCAGGGGTAGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACG GAGCTGGTATATGCGGAGTCCAACAGAAGCTTGTGCAGGACTCTTGAGTTGEST: gi|18368933|gb|BJ201018.1|BJ201018
genomic: CTCAGGGGTAGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACGgtgagttggt ... tttggggtagGAGCTGGTATATGCGGAGTCCAACAGAAGCTTGTGCAGGACTCTTGAGTTG
EST: CTCAGGGGTAGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACG GAGCTGGTATATGCGGAGTCCAACAGAAGCTTGTGCAGGACTCTTGAGTTGEST: gi|18375288|gb|BJ206866.1|BJ206866
genomic: CTCAGGGGTAGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACGgtgagttggt ... tttggggtagGAGCTGGTATATGCGGAGTCCAACAGAAGCTTGTGCAGGACTCTTGAGTTG
EST: CTCAGGGGTAGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACG GAGCTGGTATATGCGGAGTCCAACAGAAGCTTGTGCAGGACTCTTGAGTTGEST: gi|18343567|gb|BJ175605.1|BJ175605
genomic: CTCAGGGGTAGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACGgtgagttggt ... tttggggtagGAGCTGGTATATGCGGAGTCCAACAGAAGCTTGTGCAGGACTCTTGAGTTG
EST: CTCAGGGGTAGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACG GAGCTGGTATATGCGGAGTCCAACAGAAGCTTGTGCAGGACTCTTGAGTTGEST: gi|18329759|gb|BJ161765.1|BJ161765
genomic: CTCAGGGGTAGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACGgtgagttggt ... tttggggtagGAGCTGGTATATGCGGAGTCCAACAGAAGCTTGTGCAGGACTCTTGAGTTG
EST: CTCAGGGGTAGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACG GAGCTGGTATATGCGGAGTCCAACAGAAGCTTGTGCAGGACTCTTGAGTTGEST: gi|18358397|gb|BJ190456.1|BJ190456
genomic: CTCAGGGGTAGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACGgtgagttggt ... tttggggtagGAGCTGGTATATGCGGAGTCCAACAGAAGCTTGTGCAGGACTCTTGAGTTG
EST: CTCAGGGGTAGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACG GAGCTGGTATATGCGGAGTCCAACAGAAGCTTGTGCAGGACTCTTGAGTTG
genomic: CTCAGGGGTAGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACGgtgagttggt ... tttggggtagGAGCTGGTATATGCGGAGTCCAACAGAAGCTTGTGCAGGACTCTTGAGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGGCAGCAAAGGTTTGCTCTTGGTTGCGATTCCACACTGTTTCTGGCGCTCAGGGGTAGGGAGCGAGTTCTGCTGCCACCGAGCAAGGATCTTTCACGgtgagttggttcacgtgcgtccctcatagctatagcccgagttgggttgcagattgagtagggttggatgcgagctatagggcttattgagagtggttgaggaattggattcgttgcatactgtatattcaaagtggacttagtttgcgtggggtgagtatcacttacggtggcgagggatggcctttggggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG