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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGATATTATCTTCCGAAGAAGGTCGGTGATAGGAAGATTGACCTTGATCTCATCCAAGACGTGGATCTTTACAAACTTGAGCCATGGGATCTTCACGgtaatcacgaatcatcatactttaattgggttgctcgtaggacaggtaaaaacattcagaattaggatttggaggctaagaaatgagtttcaaccttctatgttattgcagcaccgttgtgcatttaactgtcttacaatctaccctaacatagagttacatgctgtaattcag

Basic information

species Physcomitrella patens
transcript PP1S201_58V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S201_58V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: Vv02s0154g00020.t01 (Vitis vinifera), 5'ss of exon 1
GTGGGATATTATCTTCCGAAGAAGGTCGGTGATAGGAAGATTGACCTTGATCTCATCCAAGACGTGGATCTTTACAAACTTGAGCCATGGGATCTTCACGgtaatcacgaatcatcatactttaattgggttgctcgtaggacaggtaaaaacattcagaattaggatttggaggctaagaa--atgagtttcaaccttctatgttattgcagcaccgttgtgcatttaactgtcttacaatctaccctaacatagagttacatgctgtaattcag
|| |  || || |||   || ||||| | |   || | |||||| || ||| ||||  |||| || ||||| |||||| ||||||||||||||||||| ||||   |       | || | |  | |   |  ||      |||    |||| ||  | |  | |   |   |  ||| | |  || |  |   || ||| |||||       ||   || |  |||| | |                                            
GTCGATTACTACCTTAGAAAAAAGGTTGCTTCGAGAAGGATTGATCTAGATGTCATTAAAGATGTCGATCTCTACAAAATTGAGCCATGGGATCTTCAAGgtatgta---gctcttattcctacagtccttccctatgcatacaacagaaaatatgtatatcttga--tgaaatactatgcatcataaaatctgac-ttccatgtt-------catttttcttaatttgaatag------------------------------------------