1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGAGTTGCTTGCGCAAGTTCGGCCAGGATGAGTGCGGAGAAGGAGCGCGAGAGCTATGTGTACATGGCCAAGCTCGCCGAGCAGGCGGAGCGTTACGACGgtacgtgcttaattttttgtcctggtgtgtgtgtttgtttgttttgttttgttttgttttgttttttttttttttccagatcgcgagcttgttgtttgaa...
species | Physcomitrella patens |
transcript | PP1S201_25V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGCTATGTGTACATGGCCAAGCTCGCCGAGCAGGCGGAGCGTTACGACG AAATGGTGGAGTCGATGAAGAAAGTCGCGAAGCTTGACGTGGAACTTACAGEST: gi|162276326|gb|FC452628.1|FC452628
genomic: GAGCTATGTGTACATGGCCAAGCTCGCCGAGCAGGCGGAGCGTTACGACGgtacgtgctt ... ccaactgcagAAATGGTGGAGTCGATGAAGAAAGTCGCGAAGCTTGACGTGGAACTTACAG
EST: GAGCTATGTGTACATGGCCAAGCTCGCCGAGCAGGCGGAGCGTTACGACG AAATGGTGGAGTCGATGAAGAAAGTCGCGAAGCTTGACGTGGAACTTACAGEST: gi|208352969|gb|DC913853.1|DC913853
genomic: GAGCTATGTGTACATGGCCAAGCTCGCCGAGCAGGCGGAGCGTTACGACGgtacgtgctt ... ccaactgcagAAATGGTGGAGTCGATGAAGAAAGTCGCGAAGCTTGACGTGGAACTTACAG
EST: GAGCTATGTGTACATGGCCAAGCTCGCCGAGCAGGCGGAGCGTTACGACG AAATGGTGGAGTCGATGAAGAAAGTCGCGAAGCTTGACGTGGAACTTACAGEST: gi|162228076|gb|FC404644.1|FC404644
genomic: GAGCTATGTGTACATGGCCAAGCTCGCCGAGCAGGCGGAGCGTTACGACGgtacgtgctt ... ccaactgcagAAATGGTGGAGTCGATGAAGAAAGTCGCGAAGCTTGACGTGGAACTTACAG
EST: GAGCTATGTGTACATGGCCAAGCTCGCCGAGCAGGCGGAGCGTTACGACG AAATGGTGGAGTCGATGAAGAAAGTCGCGAAGCTTGACGTGGAACTTACAGEST: gi|208379881|gb|DC927607.1|DC927607
genomic: GAGCTATGTGTACATGGCCAAGCTCGCCGAGCAGGCGGAGCGTTACGACGgtacgtgctt ... ccaactgcagAAATGGTGGAGTCGATGAAGAAAGTCGCGAAGCTTGACGTGGAACTTACAG
EST: GAGCTATGTGTACATGGCCAAGCTCGCCGAGCAGGCGGAGCGTTACGACG AAATGGTGGAGTCGATGAAGAAAGTCGCGAAGCTTGACGTGGAACTTACAGEST: gi|208376281|gb|DC940979.1|DC940979
genomic: GAGCTATGTGTACATGGCCAAGCTCGCCGAGCAGGCGGAGCGTTACGACGgtacgtgctt ... ccaactgcagAAATGGTGGAGTCGATGAAGAAAGTCGCGAAGCTTGACGTGGAACTTACAG
EST: GAGCTATGTGTACATGGCCAAGCTCGCCGAGCAGGCGGAGCGTTACGACG AAATGGTGGAGTCGATGAAGAAAGTCGCGAAGCTTGACGTGGAACTTACAGEST: gi|100376622|gb|BY986255.1|BY986255
genomic: GAGCTATGTGTACATGGCCAAGCTCGCCGAGCAGGCGGAGCGTTACGACGgtacgtgctt ... ccaactgcagAAATGGTGGAGTCGATGAAGAAAGTCGCGAAGCTTGACGTGGAACTTACAG
EST: GAGCTATGTGTACATGGCCAAGCTCACCGAGCAGGCGGAGCGTTACGACG AAATGGTGGAGTCGATGAAGAAAGTCGCGAAGCTTGACGTGGAACTTACAG
genomic: GAGCTATGTGTACATGGCCAAGCTCGCCGAGCAGGCGGAGCGTTACGACGgtacgtgctt ... ccaactgcagAAATGGTGGAGTCGATGAAGAAAGTCGCGAAGCTTGACGTGGAACTTACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGTTGCTTGCGCAAGTTCGGCCAGGATGAGTGCGGAGAAGGAGCGCGAGAGCTATGTGTACATGGCCAAGCTCGCCGAGCAGGCGGAGCGTTACGACGgtacgtgcttaattttttgtcctggtgtgtgtgtttgtttgttttgttttgttttgttttgttttttttttttttccagatcgcgagcttgttgtttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG