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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCGTCCACAAGGGTATGCCTCACAAGTTCTACCACGGGCGCACCGGCATCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattgaccttctccctccctcccccgaagccgaagccgcctggtcgtgggagctcccccttcctgcttcgttctagggtttttccttctttggctg...

Basic information

species Physcomitrella patens
transcript PP1S1_780V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S1_780V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os10g32820.1 (Oryza sativa), 5'ss of exon 1
AGCCGTCCACAAGGGTATGCCTCACAAGTTCTACCACGGGCGCACCGGCATCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattgaccttctccctccctcccccgaagccgaagccgcctggtcgtgggagctcccccttcctgcttcgttctagggtttt----tccttctttggctg
||||| |||||||| ||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| |||| |||| ||| ||||||||||||| | || |||| ||||| | || ||||||| | || || || | || ||| | || | || || | ||| ||
CGCCGTGCACAAGGGGATGCCGCACAAGTTCTACCACGGCCGCACCGGCCGCGTCTGGAACGTCACCAAGCGCGCCATCGGCGTCGAGATCAACAAGCAGgtataacc--cccgatccccaaacaccccggcggcggcgccgcctctttgtcatagatctgtggttgtg--tcgcttaagtgacttggtgtcatgtttttgccc

upper sequence: PP1S1_780V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os03g04750.1 (Oryza sativa), 5'ss of exon 1
AGCCGTCCACAAGGGTATGCCTCACAAGTTCTACCACGGGCGCACCGGCATCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattgaccttctccctccctcccccgaagccgaagccgcctggtcgtgggagctcccccttcctgcttcgttctagggtttttccttctttggctg
||||| |||||||| ||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| |||| |||| ||| ||||||||||||| || | || || | | | || | | | || | | | | | | | | | ||||||
CGCCGTGCACAAGGGCATGCCGCACAAGTTCTACCACGGCCGCACCGGCCGCGTCTGGAACGTCACCAAGCGCGCCATCGGCGTCGAGATCAACAAGCAGgtataatccgctccgctccggccatagcggcatcctttcctcttcctccctcttttcttctcaacaggcggtagatttggtagatctgtgctgttggctc

upper sequence: PP1S1_780V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G089421_T01 (Zea mays), 5'ss of exon 1
AGCCGTCCACAAGGGTATGCCTCACAAGTTCTACCACGGGCGCACCGGCATCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattgaccttctccctccctcccccgaagccgaagccgcctggtcgtgggagctcccccttcctgcttcgttctagggtttttccttctttggctg--------
||||| |||||||| ||||| ||||||||||||||||| |||||||| | ||||||||||||||||||||| ||| |||| |||| ||| ||||||||||||| | | | | | || || | | || || || | | || | | | | || | | | | | || ||
CGCCGTGCACAAGGGCATGCCGCACAAGTTCTACCACGGCCGCACCGGGAGCGTCTGGAACGTCACCAAGCGCGCCATCGGCGTCGAGATCAACAAGCAGgtataact----cccgcaccagctaccatgctgtcgt--tcgttccgt-atcagcattcgttttgttagatctatgctgctgatgctaatacac-ggatgcataggta

upper sequence: PP1S1_780V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G026216_T01 (Zea mays), 5'ss of exon 1
AGCCGTCCACAAGGGTATGCCTCACAAGTTCTACCACGGGCGCACCGGCATCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattgaccttctccctccctcccccgaagccgaagccgcctggtcgtgggagctc---ccccttcctgcttcgttctagggtttttccttctttggctg
|||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| ||| |||| |||| ||| ||||||||||||| || || | | | | || |||| || || | | || ||| | || |||| | |
CGCCGTCCACAAGGGGATGCCGCACAAGTTCTACCACGGCCGCACCGGTCGCGTCTGGAACGTCACCAAGCGCGCCATCGGCGTCGAGATAAACAAGCAGgtataccacacggatcccttttcgctagctcgctgataggttgctgggcgcaggcagttgaaatcgtttgtgcacggcgcttacgtttagtgcgcggacg---

upper sequence: PP1S1_780V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G149257_T01 (Zea mays), 5'ss of exon 1
AGCCGTCCACAAGGGTATGCCTCACAAGTTCTACCACGGGCGCACCGGCATCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgat--tgaccttctccctccctcccccgaagccgaagccgcctg-gtcgtgggagctcccccttcctgcttcgttctagggtttttccttctttggctg
||||| |||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| ||| |||| || | ||| ||||||||||||| | | | |||| | ||| || | || || | | |||| | | || |||| | | ||
CGCCGTGCACAAGGGCATGCCGCACAAGTTCTACCACGGCCGCACCGGTCGCGTCTGGAACGTCACCAAGCGCGCCATCGGCGTTGAGATCAACAAGCAGgtataacgcccgcaccagcataccctgtgttgtcattcgttccgtatgcgccgccggtttgctagatgtgtgctgc-tgct--ggttgatggcaatacagcga

upper sequence: PP1S1_780V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA03G36560.1 (Glycine max), 5'ss of exon 1
AGCCGTCCACAAGGGTATGCCTCACAAGTTCTACCACGGGCGCACCGGCATCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattgaccttctccctccctcccccgaagccga--agccgcctggtcgtgggagctcccccttcctgcttcgttctagggtttttccttctttggctg
|||||||||||||| ||||| |||||||||||||| || |||||||| ||||||||| |||||||| ||||| || || |||| | ||||||||||| | || ||| ||| || | | | ||| | | | || ||| || | | | | | ||| |
CGCCGTCCACAAGGGAATGCCACACAAGTTCTACCATGGCCGCACCGGTCGCGTCTGGAATGTCACCAAACGTGCTGTTGGGGTCGAAGTCAACAAGCAGgtctcgc--actctcttccttaaccctaacactctatttacttttctgcttctcgatctgttttgttatgtcttttttatcgtgatactatcgcttccaatt

upper sequence: PP1S1_780V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA19G39240.1 (Glycine max), 5'ss of exon 1
AGCCGTCCACAAGGGTATGCCTCACAAGTTCTACCACGGGCGCACCGGCATCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattgaccttctccctccctcccccgaagccgaagccgc--ctggtcgtgggagc-tcccccttcctgcttcgttctagggtttttccttctttggctg
||||| |||||||| ||||| ||||| |||||||| || |||||||| ||||||||| |||||||| ||||| || || |||| | ||||||||||| | | | | || || | || || ||| | | | | || ||| ||| | | | | || | | |
TGCCGTTCACAAGGGAATGCCCCACAAATTCTACCATGGCCGCACCGGACGCGTCTGGAATGTCACCAAACGTGCTGTTGGCGTCGAAGTCAACAAGCAGgtctcacactcttccttaaccctagcaccacccttctttccttttctgcttttcgatctgttgtgttttctgtttcttattgtgatattctcgtgtcgaa---

upper sequence: PP1S1_780V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: AT1G09590.1 (Arabidopsis thaliana), 5'ss of exon 1
AGCCGTCCACAAGGGTATGCCTCACAAGTTCTACCACGGGCGCACCGGCATCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattgaccttctccctccctcccccgaagccgaagccgcctggtcgtgggagctcccccttcctgcttcgttctagggtttttccttctttggctg---------
|| ||||||||||||||||||||||||||||||| || || || || ||||||||||||||||||| ||||||||||| | | ||||| ||||| |||| || ||| || ||| || | | ||| | | ||| | ||| || || || || || | ||| |
TGCGATCCACAAGGGTATGCCTCACAAGTTCTACCATGGTCGTACTGGTCGTATCTGGAACGTCACCAAGCGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatga------tctctcacttcccttaaacttttgtgtccttgaattagga-tttgagcttgttgtgctattt--ggattgttgatctgttgatttgatgttgaa

upper sequence: PP1S1_780V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: AT1G09690.1 (Arabidopsis thaliana), 5'ss of exon 1
AGCCGTCCACAAGGGTATGCCTCACAAGTTCTACCACGGGCGCACCGGCATCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattgaccttctccctccctcccccgaagccgaagccgcctggtcgtgggagctcccccttcctgcttcgttctagggtttttccttctttggctg-------
|| |||||||||||||||||||||||||||||||||| || || || ||||||||||||| || || ||||||||||| | | ||||| ||||| |||| || || | || ||| | | | | | ||| | |||| | | | | | || || | ||| | |||
TGCGATCCACAAGGGTATGCCTCACAAGTTCTACCACGGTCGTACTGGTCGTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaactctcctatctcttc------agcttttgtgtcattgaattagga-tttgagcttcttagtgtgctatttggattgttgatctattgctttgatgta

upper sequence: PP1S1_780V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: AT1G57660.1 (Arabidopsis thaliana), 5'ss of exon 1
AGCCGTCCACAAGGGTATGCCTCACAAGTTCTACCACGGGCGCACCGGCATCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtat-gattgaccttctccctccctcccccgaagccgaagccgcctggtcgtgggagctcccccttcctgcttcgttctagggtttttccttctttggctg------
||| ||||||||||||||||||| ||||||||||| || || || || | ||||||| ||||| ||||||||||| ||||| | | ||||| ||||| | |||| | || || | | ||| || | || | | | || | | | | | | |||| || | |
AGCTATCCACAAGGGTATGCCTCATAAGTTCTACCATGGTCGTACTGGTCGCATCTGGAATGTCACTAAGCGTGCCGTTGGTGTTGAAGTCAACAAACAGgtgttgattactcaaatctctaatctgtttggaa---aagtt--ttgattgttgaaattagggtttg--aatgtgattttgattctttcatttggggtttaattcgt

upper sequence: PP1S1_780V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: AT1G57860.1 (Arabidopsis thaliana), 5'ss of exon 1
AGCCGTCCACAAGGGTATGCCTCACAAGTTCTACCACGGGCGCACCGGCATCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattgaccttctccctccctcccccgaagccgaagccgcctggtcgtgggagctcccccttcctgcttcgttctagggtttttccttctttggctg------
||| ||||||||||||||||||| ||||||||||| || || || || | ||||||| ||||| || |||||||| ||||| | | ||||| ||||| ||||| | | | || | || || | || | | || || || | | || || | | | || |
AGCTATCCACAAGGGTATGCCTCATAAGTTCTACCATGGTCGTACTGGTCGCATCTGGAATGTCACTAAACGTGCCGTTGGTGTTGAAGTCAACAAACAGgtttgattactcaaaacttttaatctgtttgaa--agagttttttgttgttgaaa--ttagggtttgaaattgatttt--gattctttcatttggggtttaattcg

upper sequence: PP1S1_780V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: Vv08s0007g06890.t01 (Vitis vinifera), 5'ss of exon 1
AGCCGTCCACAAGGGTATGCCTCACAAGTTCTACCACGGGCGCACCGGCATCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattgaccttctccctccctcccccgaagccgaagccgcctggtcgtgggagctcccccttcctgcttcgttctagggtttttccttctttggctg-
|||||||||||||| ||||| |||||||||||||| || ||||| || | |||||||||||||||||||| ||| ||||||| | | ||||||||||| | | | || || ||| | | | | | | || || | | | ||| | | | ||| ||
CGCCGTCCACAAGGGCATGCCCCACAAGTTCTACCATGGCCGCACTGGTAAGGTCTGGAACGTCACCAAGCGCGCCATCGGTGTTGAAGTAAACAAGCAGgtctc-tcctctacatctctatctctctctgatgtgttgttgttgtgttttgatcgtagtttatgggtttaatgttttgtttgtgtgaaaatggtggttga

upper sequence: PP1S1_780V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: Vv01s0150g00520.t01 (Vitis vinifera), 5'ss of exon 1
AGCCGTCCACAAGGGTATGCCTCACAAGTTCTACCACGGGCGCACCGGCATCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattgaccttctccctccctcccccgaagccgaagccgcctggtcgtgggagctcccccttcctgcttcgttctagggtttttccttctttggctg
||| | |||||||| ||||| ||||||||||| || || |||||||||| |||||||||||||||||||||||| | || || | | ||||| |||| || | ||||||| | || | | | | | || | | | | | | || | | |||| | | |
CGCCATTCACAAGGGCATGCCCCACAAGTTCTATCATGGCCGCACCGGCAAGGTCTGGAACGTCACCAAGCGTGCCATAGGCGTTGAAGTCAACAAACAGgcatctctcttcttctccttgtctttctctactctgctgcatcattctattatcattattatgaatccagatctcttcaacattttcatatttccaattc

upper sequence: PP1S1_780V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: Vv08s0007g07010.t01 (Vitis vinifera), 5'ss of exon 1
AGCCGTCCACAAGGGTATGCCTCACAAGTTCTACCACGGGCGCACCGGCATCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattgaccttct--ccctccctcccccgaagccgaagccgcctgg--tcgtgggagctcccccttcctgcttcgttcta--gggtttttccttctttggctg
||| |||||||||| ||||| |||||||||||||| || ||||| || | ||||||||||| || ||||| ||| |||| |||| | ||||||||||||| || | |||| || | || | | | | | ||| | || | | || || | | | ||||||| |||
CGCCATCCACAAGGGCATGCCCCACAAGTTCTACCATGGCCGCACTGGTAAGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttctctttctgcccgtgtcttgattgtaatctat-ttgtatggtattttgtttgtgtggaaatggtgttttgattgattgggttttcttgatttt-----

upper sequence: PP1S1_780V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EDO99609 (Chlamydomonas reinhardtii), 5'ss of exon 2
AGCCGTCCACAAGGGTATGCCTCACAAGTTCTACCACGGGCGCACCGGCATCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattgaccttctccctccctcccccgaagccgaagccgcctggtcgtgggagctcccccttcctgcttcgtt-ctagggtttttccttctttggctg-
|| ||||| ||||||| ||||| || ||||| | ||||||||||||||||||||| ||| ||||||| | | | ||||||| ||| | | ||| ||| || | |||| | | || || | | ||| | | | | | | ||| |
-------------GGCATGCCCCACAAGTGGTACCAGGGCAAGACCGGTACCGTCTGGAACGTCACCAAGCGCGCCATCGGTGTGGAGGTCAACAAGCGGgtgggtcttgttgtcttgctcgcttgtgtgg-gccgggttcacttg-tcaaaattgtttgtcctgagaataatgccaccaagctgcaaagctggacggcgga

upper sequence: PP1S1_780V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ28214 (Selaginella moellendorffii), 5'ss of exon 1
AGCCGTCCACAAGGGTATGCCTCACAAGTTCTACCACGGGCGCACCGGCATCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgatt----gacct-tctccctccctcccccgaagccgaagccgcctggtcgtgggagctcccccttcctgcttcgttctagggtttt-tccttctttggctg-
|| |||||||||| ||||| ||||| || |||||||| |||||||| | || ||||| ||||||||||| || ||||| |||| |||||||||||||||||| | || | || || | | | | | | | | | || | | | | | | | |||||| |||
CGCGATCCACAAGGGCATGCCGCACAAATTTTACCACGGCCGCACCGGGGTTGTGTGGAATGTCACCAAGCGCGCGGTCGGAGTCGAGATGAACAAGCAGgtatgcctcgcggatcgatcaatctttcgagttttagctctttcctttccaattcgatgtgggttttcgcaagattttgatgtggattcctgtgcttcttctgctag

upper sequence: PP1S1_780V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ29711 (Selaginella moellendorffii), 5'ss of exon 1
AGCCGTCCACAAGGGTATGCCTCACAAGTTCTACCACGGGCGCACCGGCATCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattgaccttctccctccctcccccgaagccgaagccgcctggtcgtgggagctcccccttcctgcttcgttctagggtttttccttctttggctg-
|| |||||||||| ||||| ||||| ||||||||||| |||||||| | || ||||| ||||||||||| || ||||| |||| |||||||||||||||||| | | | | | | | | | || || || | | | | | | || | | | | | || |||||| |||
CGCGATCCACAAGGGCATGCCGCACAAATTCTACCACGGCCGCACCGGGGTTGTGTGGAATGTCACCAAGCGCGCGGTCGGAGTCGAGATGAACAAGCAGgtatgcctcgcatcaatcttttcgtctttctattccaattcg-------atgtgggttttcgcaagat--tttgatgtggattcttggcttcttctgctag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18354922|gb|BJ186981.1|BJ186981
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|67725374|gb|BJ975633.1|BJ975633
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|162260978|gb|FC436891.1|FC436891
EST:     TCGTTTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|162273506|gb|FC449651.1|FC449651
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|7583716|gb|AW699622.1|AW699622
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|162209483|gb|FC386116.1|FC386116
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTACGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|162260979|gb|FC436892.1|FC436892
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|7046962|gb|AW476856.1|AW476856
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|161984198|gb|EE296418.1|EE296418
EST:     TCGTCTGGAACGTCACCAAGCATGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|67718546|gb|BJ968805.1|BJ968805
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|162242455|gb|FC418954.1|FC418954
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTACGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|67508298|gb|BJ941167.1|BJ941167
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|18359435|gb|BJ191496.1|BJ191496
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|67712692|gb|BJ966141.1|BJ966141
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|67726985|gb|BJ977244.1|BJ977244
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|37852842|gb|BJ610850.1|BJ610850
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|6167161|gb|AW145425.1|AW145425
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|18366477|gb|BJ198556.1|BJ198556
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|15320305|gb|BI488111.1|BI488111
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|162269530|gb|FC445086.1|FC445086
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|37831528|gb|BJ589540.1|BJ589540
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|18325385|gb|BJ157381.1|BJ157381
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|37846857|gb|BJ604865.1|BJ604865
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|67724405|gb|BJ974664.1|BJ974664
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|162271792|gb|FC448925.1|FC448925
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|162274147|gb|FC450219.1|FC450219
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|67571299|gb|BJ944123.1|BJ944123
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|162260187|gb|FC436322.1|FC436322
EST:     TTGTTTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|67698182|gb|BJ958415.1|BJ958415
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|19782706|gb|BQ039895.1|BQ039895
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|67710279|gb|BJ965942.1|BJ965942
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|67574760|gb|BJ947584.1|BJ947584
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|7067443|gb|AW497298.1|AW497298
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|67702708|gb|BJ962941.1|BJ962941
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|162271793|gb|FC448926.1|FC448926
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|67695525|gb|BJ955758.1|BJ955758
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|162273505|gb|FC449650.1|FC449650
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|162269531|gb|FC445087.1|FC445087
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|67716856|gb|BJ967115.1|BJ967115
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|7047439|gb|AW477333.1|AW477333
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|15320111|gb|BI487672.1|BI487672
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|162209484|gb|FC386117.1|FC386117
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTACGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|162260188|gb|FC436323.1|FC436323
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|67694619|gb|BJ954852.1|BJ954852
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|7583673|gb|AW699580.1|AW699580
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|67691514|gb|BJ951747.1|BJ951747
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|37831614|gb|BJ589626.1|BJ589626
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|67721212|gb|BJ971471.1|BJ971471
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
EST: gi|67572157|gb|BJ944981.1|BJ944981
EST:     TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAG                         GTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 35 (downstream exon)
Score: 50

AGCCGTCCACAAGGGTATGCCTCACAAGTTCTACCACGGGCGCACCGGCATCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattga ... aattgtacagGTCGGAAACAGGATCATCCAGAAGCGTCTTCATGTGCGTATTGAGCACGTGCAGCCTTCACGCTGCCGGGAAGAATTTCTTGAGCGTCGCAAGAGCAATG




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