Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|162262452|gb|FC439495.1|FC439495EST: GCAGCGACAGCATCTG GTATGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCC
genomic: GCAGCGACAGCATCTGgtattacccc ... tgatttgcagGTACGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCC
EST:
gi|67698714|gb|BJ958947.1|BJ958947EST: GCAGCGACAGCATCTG GTATGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCC
genomic: GCAGCGACAGCATCTGgtattacccc ... tgatttgcagGTACGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCC
EST:
gi|18338024|gb|BJ170048.1|BJ170048EST: AGCGACAGCATCTG GTATGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCC
genomic: AGCGACAGCATCTGgtattacccc ... tgatttgcagGTACGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCC
EST:
gi|162260163|gb|FC436298.1|FC436298EST: GTCACCATGCGTCGAACCGTCAACAAGTCGGCTGGCAGCGACAGCATCTG GTATGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCC
genomic: GTCACGATGCGTCGGACCGTCAGCAAGTCCGCTCGCAGCGACAGCATCTGgtattacccc ... tgatttgcagGTACGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCC
EST:
gi|162204589|gb|FC381973.1|FC381973EST: GTCACGATGCGTCGGACCGTCAGCAAGTCCGCTCGCAGCGACAGCATCTG GTACGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCC
genomic: GTCACGATGCGTCGGACCGTCAGCAAGTCCGCTCGCAGCGACAGCATCTGgtattacccc ... tgatttgcagGTACGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCC
EST:
gi|208378189|gb|DC918810.1|DC918810EST: GCAGCGACAGCATCTG GTATGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCC
genomic: GCAGCGACAGCATCTGgtattacccc ... tgatttgcagGTACGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCC
EST:
gi|208348686|gb|DC926361.1|DC926361EST: GCAGCGACAGCATNT- GTA-TGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCC
genomic: GCAGCGACAGCATCTGgtattacccc ... tgatttgcagGTACGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCC
EST:
gi|162276486|gb|FC452164.1|FC452164EST: GCAGCGACAGCATCTG GTATGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCC
genomic: GCAGCGACAGCATCTGgtattacccc ... tgatttgcagGTACGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCC
EST:
gi|162214182|gb|FC390228.1|FC390228EST: GTCACCATGCGTCGAACCGTCAACAAGTCGGCTGGCAGCGACAGCATCTG GTATGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCC
genomic: GTCACGATGCGTCGGACCGTCAGCAAGTCCGCTCGCAGCGACAGCATCTGgtattacccc ... tgatttgcagGTACGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCC
EST:
gi|208354288|gb|DC957466.1|DC957466EST: GTCACCATGCGTCGAACCGTCAACAAGTCGGCTGGCAGCGACAGCATCTG GTATGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCC
genomic: GTCACGATGCGTCGGACCGTCAGCAAGTCCGCTCGCAGCGACAGCATCTGgtattacccc ... tgatttgcagGTACGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCC
EST:
gi|162203664|gb|FC379150.1|FC379150EST: GTCACCATGCGTCGAACCGTCAACAAGTCGGCTGGCAGCGACAGCATCTG GTATGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCC
genomic: GTCACGATGCGTCGGACCGTCAGCAAGTCCGCTCGCAGCGACAGCATCTGgtattacccc ... tgatttgcagGTACGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCC
EST:
gi|162215789|gb|FC390854.1|FC390854EST: CAGCGACAGCATCTG GTATGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTCCCGGCGAGACCCC
genomic: CAGCGACAGCATCTGgtattacccc ... tgatttgcagGTACGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCC
EST:
gi|162153728|gb|FC329131.1|FC329131EST: GTCACCATGCGTCGAACCGTCAACAAGTCGGCTGGCAGCGACAGCATCTG GTATGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCC
genomic: GTCACGATGCGTCGGACCGTCAGCAAGTCCGCTCGCAGCGACAGCATCTGgtattacccc ... tgatttgcagGTACGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCC
EST:
gi|67698321|gb|BJ958554.1|BJ958554EST: GCGACAGCATCTG GTATGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCC
genomic: GCGACAGCATCTGgtattacccc ... tgatttgcagGTACGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCC
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
25 (upstream exon),
16 (downstream exon)
Score:
6TCAAGCCCGTCAATGAGCTGTCCCGCAGGGTGGGCAATGTCGACGCCCGCGTCACGATGCGTCGGACCGTCAGCAAGTCCGCTCGCAGCGACAGCATCTGgtattacccc ... tgatttgcagGTACGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCCGTCGTACCTGAACGGCGAGTTCGCTGGAGACTACGGGTGGGACACCGCT
<
<
<