Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCTTTTCGTGGTCGGCTTGTTGTCTGAGCTCCTTCCGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatgctcgtgtcttcttcgtgaagtttttcttcgcatttgattcgttatttgatgaaaaggaggcttagggttttatgcggccgacacatgaccgtgcagcttctggcgtttgttgctaattttgtttctaatgcattgcag

Basic information

species Physcomitrella patens
transcript PP1S1_489V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162241794|gb|FC418049.1|FC418049
EST:     CCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|18354554|gb|BJ186611.1|BJ186611
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|22133059|gb|BQ827524.1|BQ827524
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|37835950|gb|BJ593962.1|BJ593962
EST:     CTTCACCGGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CTTCACC-GCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|67699814|gb|BJ960047.1|BJ960047
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|208379526|gb|DC911137.1|DC911137
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|37826607|gb|BJ584619.1|BJ584619
EST:     GCTTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: GC-TGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|162253359|gb|FC429785.1|FC429785
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|37840235|gb|BJ598243.1|BJ598243
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|162207763|gb|FC383848.1|FC383848
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|18362518|gb|BJ194588.1|BJ194588
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|37828619|gb|BJ586631.1|BJ586631
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|37841368|gb|BJ599376.1|BJ599376
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|67704082|gb|BJ964315.1|BJ964315
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|18373127|gb|BJ204729.1|BJ204729
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|162206828|gb|FC382690.1|FC382690
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|208400306|gb|DC924944.1|DC924944
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|37829418|gb|BJ587430.1|BJ587430
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|18348983|gb|BJ181032.1|BJ181032
EST:     CTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|162249736|gb|FC425615.1|FC425615
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|162201613|gb|FC378275.1|FC378275
EST:     CACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|67572130|gb|BJ944954.1|BJ944954
EST:     TCCACGCATTGCANNGCTTGACTCTCTTCCGCAANGG                         CGAAGATCNAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: TCCACGCATTG-AGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|37843649|gb|BJ601657.1|BJ601657
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTNTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|37828742|gb|BJ586754.1|BJ586754
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|162203065|gb|FC380137.1|FC380137
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|162209802|gb|FC385736.1|FC385736
EST:     CCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|67576303|gb|BJ949127.1|BJ949127
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|208346684|gb|DC913330.1|DC913330
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|18363018|gb|BJ195090.1|BJ195090
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|19790251|gb|BQ041774.1|BQ041774
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|162233066|gb|FC408473.1|FC408473
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|162219025|gb|FC394920.1|FC394920
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|67695496|gb|BJ955729.1|BJ955729
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|37839792|gb|BJ597800.1|BJ597800
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|162211961|gb|FC388041.1|FC388041
EST:     CCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|67573978|gb|BJ946802.1|BJ946802
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|162240218|gb|FC418345.1|FC418345
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|162260996|gb|FC437416.1|FC437416
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|208379596|gb|DC927093.1|DC927093
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|22132938|gb|BQ827449.1|BQ827449
EST:     CATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|18349777|gb|BJ181827.1|BJ181827
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|162253358|gb|FC429784.1|FC429784
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTTTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|18349657|gb|BJ181707.1|BJ181707
EST:     CGCTGCTTCNCCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
EST: gi|18364283|gb|BJ196356.1|BJ196356
EST:     CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGG                         CGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA
genomic: CGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 132

AGCTCTTTTCGTGGTCGGCTTGTTGTCTGAGCTCCTTCCGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatg ... tgcattgcagCGAAGATCAAAGTTCACGAGCTCCGCGCCAAGAGCAAGAATGAACTCCTTAATCAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCTCTTTTCGTGGTCGGCTTGTTGTCTGAGCTCCTTCCGCTGCTTCACCGCTCCACGCATTGAGCGCTTGACTCTCTTCCGCAATGGgtaagacatgctcgtgtcttcttcgtgaagtttttcttcgcatttgattcgttatttgatgaaaaggaggcttagggttttatgcggccgacacatgaccgtgcagcttctggcgtttgttgctaattttgtttctaatgcattgcag

- - - - - - - - - - - - - - - - - - -  GCTGCT