Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTCCCCTGCCTTCCCCAAACTCTCGAAATCTGTGATTGACGACGTGAAGCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaattggctgtttgtttggtctacacggttcaattcttcagttctgctactcgcttcccccaaacattgctggtctcgctacgctgcagtgagcg...

Basic information

species Physcomitrella patens
transcript PP1S19_25V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162197354|gb|FC372316.1|FC372316
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|162275972|gb|FC452040.1|FC452040
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|162227896|gb|FC403704.1|FC403704
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|100385078|gb|BY987541.1|BY987541
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGNGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|162160122|gb|FC335992.1|FC335992
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|100384029|gb|BY950415.1|BY950415
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|18373433|gb|BJ205011.1|BJ205011
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|100452250|gb|CJ975176.1|CJ975176
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|162177851|gb|FC355101.1|FC355101
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|100449618|gb|CJ973850.1|CJ973850
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|100445971|gb|CJ970270.1|CJ970270
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|19784186|gb|BQ040135.1|BQ040135
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|208379833|gb|DC911718.1|DC911718
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|100386711|gb|BY970252.1|BY970252
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGNGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|18367669|gb|BJ199752.1|BJ199752
EST:     GCANATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|162192329|gb|FC368569.1|FC368569
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|100424871|gb|BY976858.1|BY976858
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|100399247|gb|BY954274.1|BY954274
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|18331288|gb|BJ163297.1|BJ163297
EST:     ATCTTCCGNACCACGACTGCTACCTNCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: ATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|18374979|gb|BJ206557.1|BJ206557
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|162195348|gb|FC369816.1|FC369816
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|18373604|gb|BJ205182.1|BJ205182
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|67569637|gb|BJ942461.1|BJ942461
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|100378996|gb|BY986522.1|BY986522
EST:     GCAGATCTTCTGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|18374413|gb|BJ205991.1|BJ205991
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|100416708|gb|BY993048.1|BY993048
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|100397274|gb|BY972417.1|BY972417
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGNGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|67577648|gb|BJ949815.1|BJ949815
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|162152750|gb|FC329756.1|FC329756
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|100442032|gb|BY962925.1|BY962925
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGNGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|162154503|gb|FC330505.1|FC330505
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|162175134|gb|FC351995.1|FC351995
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|18347712|gb|BJ179759.1|BJ179759
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|100385967|gb|BY951161.1|BY951161
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|18327120|gb|BJ159121.1|BJ159121
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|67508629|gb|BJ941491.1|BJ941491
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|18344998|gb|BJ177039.1|BJ177039
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|100441415|gb|BY962704.1|BY962704
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTNGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|162251242|gb|FC428521.1|FC428521
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|18353333|gb|BJ185388.1|BJ185388
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|162272974|gb|FC449105.1|FC449105
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|67508072|gb|BJ940943.1|BJ940943
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|162214046|gb|FC389884.1|FC389884
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|100400823|gb|BY972961.1|BY972961
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTNGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|100360865|gb|BY965941.1|BY965941
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|162172357|gb|FC348298.1|FC348298
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|100403708|gb|BY955062.1|BY955062
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|18357816|gb|BJ189875.1|BJ189875
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|18343707|gb|BJ175745.1|BJ175745
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|18325598|gb|BJ157595.1|BJ157595
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|100379660|gb|BY949880.1|BY949880
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|208359796|gb|DC939240.1|DC939240
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|18329525|gb|BJ161531.1|BJ161531
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|162162460|gb|FC338372.1|FC338372
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|18365243|gb|BJ197317.1|BJ197317
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|18361407|gb|BJ193473.1|BJ193473
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|67576668|gb|BJ949492.1|BJ949492
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACC
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACC
EST: gi|18375440|gb|BJ207018.1|BJ207018
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|100386403|gb|BY951199.1|BY951199
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|162160527|gb|FC336917.1|FC336917
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|18368051|gb|BJ200135.1|BJ200135
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|100446486|gb|CJ970785.1|CJ970785
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|162167007|gb|FC342469.1|FC342469
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|162217018|gb|FC393318.1|FC393318
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|162247382|gb|FC423102.1|FC423102
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|162152460|gb|FC328023.1|FC328023
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|100448034|gb|CJ972333.1|CJ972333
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
EST: gi|162174924|gb|FC351716.1|FC351716
EST:     GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAG                         GCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA
genomic: GCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 66

CGTTCCCCTGCCTTCCCCAAACTCTCGAAATCTGTGATTGACGACGTGAAGCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaatt ... gttgcctcagGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACAAGATTATCTCCTTCCGTCTGGGACAATTTAGTCTCCTCTGGATTGACCA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGTTCCCCTGCCTTCCCCAAACTCTCGAAATCTGTGATTGACGACGTGAAGCAGATCTTCCGTACCACGACTGCTACCTCCTTCATCTTCCCCACTACAGgtacccaattggctgtttgtttggtctacacggttcaattcttcagttctgctactcgcttcccccaaacattgctggtctcgctacgctgcagtgagcg

- - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT