1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCGATCGTTCTCTAGCGACAGCGAGGAGGAGAAGATCATCACGGCTACCTTGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAGgtgaggggtggtgtgcgttcgttttttccggaatttgcgatgttgcaatttggattccagtagtttgcgatctttttggggtggtggtttacgtggggag...
species | Physcomitrella patens |
transcript | PP1S199_33V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAG ATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGTEST: gi|67712571|gb|BJ966020.1|BJ966020
genomic: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAGgtgaggggtg ... attcttgcagATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGT
EST: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAG ATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGTEST: gi|100356789|gb|BY965281.1|BY965281
genomic: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAGgtgaggggtg ... attcttgcagATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGT
EST: GAGATCGCTGTTTCCGTGAAGGAG ATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGTEST: gi|100430358|gb|BY959829.1|BY959829
genomic: GAGATCGCTGTTTCCGTGAAGGAGgtgaggggtg ... attcttgcagATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGT
EST: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAG ATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGTEST: gi|100356940|gb|BY965355.1|BY965355
genomic: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAGgtgaggggtg ... attcttgcagATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGT
EST: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAG ATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGTEST: gi|162169490|gb|FC346054.1|FC346054
genomic: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAGgtgaggggtg ... attcttgcagATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGT
EST: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAG ATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGTEST: gi|18357165|gb|BJ189224.1|BJ189224
genomic: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAGgtgaggggtg ... attcttgcagATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGT
EST: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAG ATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGTEST: gi|208347370|gb|DC909733.1|DC909733
genomic: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAGgtgaggggtg ... attcttgcagATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGT
EST: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAG ATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGTEST: gi|100394804|gb|BY989933.1|BY989933
genomic: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAGgtgaggggtg ... attcttgcagATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGT
EST: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAG ATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGTEST: gi|162182687|gb|FC359434.1|FC359434
genomic: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAGgtgaggggtg ... attcttgcagATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGT
EST: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAG ATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGTEST: gi|208390159|gb|DC941966.1|DC941966
genomic: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAGgtgaggggtg ... attcttgcagATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGT
EST: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAG ATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGTEST: gi|67702639|gb|BJ962872.1|BJ962872
genomic: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAGgtgaggggtg ... attcttgcagATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGT
EST: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAG ATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGTEST: gi|100419133|gb|BY975861.1|BY975861
genomic: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAGgtgaggggtg ... attcttgcagATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGT
EST: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAG ATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGTEST: gi|67716618|gb|BJ966878.1|BJ966878
genomic: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAGgtgaggggtg ... attcttgcagATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGT
EST: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAG ATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGTEST: gi|18359809|gb|BJ191870.1|BJ191870
genomic: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAGgtgaggggtg ... attcttgcagATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGT
EST: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAG ATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGTEST: gi|67703570|gb|BJ963803.1|BJ963803
genomic: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAGgtgaggggtg ... attcttgcagATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGT
EST: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAG ATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGTEST: gi|18373838|gb|BJ205416.1|BJ205416
genomic: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAGgtgaggggtg ... attcttgcagATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGT
EST: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAG ATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGTEST: gi|162171538|gb|FC347840.1|FC347840
genomic: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAGgtgaggggtg ... attcttgcagATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGT
EST: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAG ATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGTEST: gi|18374858|gb|BJ206436.1|BJ206436
genomic: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAGgtgaggggtg ... attcttgcagATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGT
EST: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAG ATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGTEST: gi|18328079|gb|BJ160083.1|BJ160083
genomic: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAGgtgaggggtg ... attcttgcagATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGT
EST: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAG ATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGTEST: gi|208386342|gb|DC932838.1|DC932838
genomic: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAGgtgaggggtg ... attcttgcagATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGT
EST: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAG ATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGTEST: gi|100388374|gb|BY951976.1|BY951976
genomic: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAGgtgaggggtg ... attcttgcagATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGT
EST: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAG ATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGTEST: gi|67573305|gb|BJ946129.1|BJ946129
genomic: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAGgtgaggggtg ... attcttgcagATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGT
EST: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAG ATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGTEST: gi|18347014|gb|BJ179060.1|BJ179060
genomic: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAGgtgaggggtg ... attcttgcagATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGT
EST: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAG ATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGTEST: gi|67717729|gb|BJ967988.1|BJ967988
genomic: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAGgtgaggggtg ... attcttgcagATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGT
EST: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAG ATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGT
genomic: TGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAGgtgaggggtg ... attcttgcagATTTTCGCTGCCGCGAAAGCCCCAATTGAATGGGATGAGCATTGGGTGGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGATCGTTCTCTAGCGACAGCGAGGAGGAGAAGATCATCACGGCTACCTTGTTTCCGGGTGATGGCATTGGGCCCGAGATCGCTGTTTCCGTGAAGGAGgtgaggggtggtgtgcgttcgttttttccggaatttgcgatgttgcaatttggattccagtagtttgcgatctttttggggtggtggtttacgtggggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG