1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TTCACGTAGTTGCAGAATTCGTGCACTTCGATGCAGCGCTGCAGAAGTTGACAGATGGGATTGAGGGCACAACCGCCAGTTCTTAGGCACCTTGCTTCATgtatatctctgttctgcttcgcatccgatttagctacccttgatgtctggacgtggcgatttaagatcggcgtagttattttgttcttgcttggcaaatg...
species | Physcomitrella patens |
transcript | PP1S199_22V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACAGATGGGATTGAGGGCACAACCGCCAGTTCTTAGGCACCTTGCTTCAT GGCTTCGCAATGGGCAGGTCAGGTGTCAAAAGCCTGCAGGTCATGTCCAATEST: gi|18353878|gb|BJ185933.1|BJ185933
genomic: ACAGATGGGATTGAGGGCACAACCGCCAGTTCTTAGGCACCTTGCTTCATgtatatctct ... cggactgcagGGCTTCGCAATGGGCAGGTCAGGTGTCAAAAGCCTGCAGGTCATGTCCAAT
EST: ACAGATGGGATTGAGGGCACAACCGCCAGTTCTTAGGCACCTTGCTTCAT GGCTTCGCAATGGGCAGGTCAGGTGTCAAAAGCCTGCAGGTCACGTCCAATEST: gi|18350048|gb|BJ182099.1|BJ182099
genomic: ACAGATGGGATTGAGGGCACAACCGCCAGTTCTTAGGCACCTTGCTTCATgtatatctct ... cggactgcagGGCTTCGCAATGGGCAGGTCAGGTGTCAAAAGCCTGCAGGTCATGTCCAAT
EST: ACAGATGGGATTGAGGGCACAACCGCCAGTTCTTAGGCACCTTGCTTCAT GGCTTCGCAATGGGCAGGTCAGGTGTCAAAAGCCTGCAGGTCACGTCCAATEST: gi|100395236|gb|BY953648.1|BY953648
genomic: ACAGATGGGATTGAGGGCACAACCGCCAGTTCTTAGGCACCTTGCTTCATgtatatctct ... cggactgcagGGCTTCGCAATGGGCAGGTCAGGTGTCAAAAGCCTGCAGGTCATGTCCAAT
EST: ACAGATGGGATTGAGGGCACAACCGCCAGTTCTTAGGCACCTTGCTTCAT GGCTTCGCAATGGGCAGGTCAGGTGTCAAAAGCCTGCAGGTCATGTCCAATEST: gi|100448323|gb|CJ972622.1|CJ972622
genomic: ACAGATGGGATTGAGGGCACAACCGCCAGTTCTTAGGCACCTTGCTTCATgtatatctct ... cggactgcagGGCTTCGCAATGGGCAGGTCAGGTGTCAAAAGCCTGCAGGTCATGTCCAAT
EST: ACAGATGGGATTGAGGGCACAACCGCCAGTTCTTAGGCACCTTGCTTCAT GGCTTCGCAATGGGCAGGTCAGGTGTCAAAAGCCTGCAGGTCATGTCCAAT
genomic: ACAGATGGGATTGAGGGCACAACCGCCAGTTCTTAGGCACCTTGCTTCATgtatatctct ... cggactgcagGGCTTCGCAATGGGCAGGTCAGGTGTCAAAAGCCTGCAGGTCATGTCCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCACGTAGTTGCAGAATTCGTGCACTTCGATGCAGCGCTGCAGAAGTTGACAGATGGGATTGAGGGCACAACCGCCAGTTCTTAGGCACCTTGCTTCATgtatatctctgttctgcttcgcatccgatttagctacccttgatgtctggacgtggcgatttaagatcggcgtagttattttgttcttgcttggcaaatg
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