1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGAAACCGTGGTGCGGGACAAGTCTGTGGAGTCGCTTTGCAAGATTGGCTCGCAGATGAAGGAGCGAGATGTCGTGGAGTGGTTCATTCCGCTTGTTAAGgttagcaggggtttttaccatttttctgttgtgacgtgttgtgttgcggtgttttgcgtttttttgcagcattttgctagggttcttaggggagagatgt...
species | Physcomitrella patens |
transcript | PP1S197_114V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCAGATGAAGGAGCGAGATGTCGTGGAGTGGTTCATTCCGCTTGTTAAG AGGCTCGGTGCTGGGGAATGGTTCACCGCACGAGTGTCAGCCTGCGGGCTTEST: gi|67718294|gb|BJ968553.1|BJ968553
genomic: CGCAGATGAAGGAGCGAGATGTCGTGGAGTGGTTCATTCCGCTTGTTAAGgttagcaggg ... atgataacagAGGCTCGGTGCTGGGGAATGGTTCACCGCACGAGTGTCAGCCTGCGGGCTT
EST: CGCAGATGAAGGAGCGAGATGTCGTGGAGTGGTTCATTCCGCTTGTTAAG AGGCTCGGTGCTGGGGAATGGTTCACCGCACGAGTGTCAGCCTGCGGGCTTEST: gi|162173325|gb|FC349496.1|FC349496
genomic: CGCAGATGAAGGAGCGAGATGTCGTGGAGTGGTTCATTCCGCTTGTTAAGgttagcaggg ... atgataacagAGGCTCGGTGCTGGGGAATGGTTCACCGCACGAGTGTCAGCCTGCGGGCTT
EST: CGCAGATGAAGGAGCGAGATGTCGTGGAGTGGTTCATTCCGCTTGTTAAG AGGCTCGGTGCTGGGGAATGGTTCACCGCACGAGTGTCAGCCTGCGGGCTTEST: gi|18325512|gb|BJ157509.1|BJ157509
genomic: CGCAGATGAAGGAGCGAGATGTCGTGGAGTGGTTCATTCCGCTTGTTAAGgttagcaggg ... atgataacagAGGCTCGGTGCTGGGGAATGGTTCACCGCACGAGTGTCAGCCTGCGGGCTT
EST: CGCAGATGAAGGAGCGAGATGTCGTGGAGTGGTTCATTCCGCTTGTTAAG AGGCTCGGTGCTGGGGAATGGTTCACCGCACGAGTGTCAGCCTGCGGGCTTEST: gi|18365472|gb|BJ197549.1|BJ197549
genomic: CGCAGATGAAGGAGCGAGATGTCGTGGAGTGGTTCATTCCGCTTGTTAAGgttagcaggg ... atgataacagAGGCTCGGTGCTGGGGAATGGTTCACCGCACGAGTGTCAGCCTGCGGGCTT
EST: CGCAGATGAAGGAGCGAGATGTCGTGGAGTGGTTCATTCCGCTTGTTAAG AGGCTCGGTGCTGGGGAATGGTTCACCGCACGAGTGTCAGCCTGCGGGCTTEST: gi|162169852|gb|FC346208.1|FC346208
genomic: CGCAGATGAAGGAGCGAGATGTCGTGGAGTGGTTCATTCCGCTTGTTAAGgttagcaggg ... atgataacagAGGCTCGGTGCTGGGGAATGGTTCACCGCACGAGTGTCAGCCTGCGGGCTT
EST: CGCAGATGAAGGAGCGAGATGTCGTGGAGTGGTTCATTCCGCTTGTTAAG AGGCTCGGTGCTGGGGAATGGTTCACCGCACGAGTGTCAGCCTGCGGGCTTEST: gi|18354276|gb|BJ186332.1|BJ186332
genomic: CGCAGATGAAGGAGCGAGATGTCGTGGAGTGGTTCATTCCGCTTGTTAAGgttagcaggg ... atgataacagAGGCTCGGTGCTGGGGAATGGTTCACCGCACGAGTGTCAGCCTGCGGGCTT
EST: CGCAGATGAAGGAGCGAGATGTCGTGGAGTGGTTCATTCCGCTTGTTAAG AGGCTCGGTGCTGGGGAATGGTTCACCGCACGAGTGTCAGCCTGCGGGCTTEST: gi|100448230|gb|CJ972529.1|CJ972529
genomic: CGCAGATGAAGGAGCGAGATGTCGTGGAGTGGTTCATTCCGCTTGTTAAGgttagcaggg ... atgataacagAGGCTCGGTGCTGGGGAATGGTTCACCGCACGAGTGTCAGCCTGCGGGCTT
EST: CGCAGATGAAGGAGCGAGATGTCGTGGAGTGGTTCATTCCGCTTGTTAAG AGGCTCGGTGCTGGGGAATGGTTCACCGCACGAGTGTCAGCCTGCGGGCTT
genomic: CGCAGATGAAGGAGCGAGATGTCGTGGAGTGGTTCATTCCGCTTGTTAAGgttagcaggg ... atgataacagAGGCTCGGTGCTGGGGAATGGTTCACCGCACGAGTGTCAGCCTGCGGGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAACCGTGGTGCGGGACAAGTCTGTGGAGTCGCTTTGCAAGATTGGCTCGCAGATGAAGGAGCGAGATGTCGTGGAGTGGTTCATTCCGCTTGTTAAGgttagcaggggtttttaccatttttctgttgtgacgtgttgtgttgcggtgttttgcgtttttttgcagcattttgctagggttcttaggggagagatgt
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG