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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGTCGGCTGTTGCCATAAAAAATGTGACTATCAATGACAACTTCTTCCCTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtcatttcagggatttgatcatcttgatatgaatgtaacattgcagtgcgcatggtttaggtcaataatgtaatagtgtgggcatttctattt...

Basic information

species Physcomitrella patens
transcript PP1S196_99V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S196_99V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os08g12840.1 (Oryza sativa), 5'ss of exon 3
GGAGTCGGCTGTTGCCATAAAAAATGTGACTATCAATGACAACTTCTTCCCTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtcatttcagggatttgatcatcttgatatgaatgtaacattgcagtgcgcatggtttaggtcaataatgtaatagtgtgggcatttctattt------
 || |  || ||||  || || ||||| || || ||||| |||||||||||||| || |||||| | || ||||| |||||||| || |||||||| |||||| ||   || |  |  |     |||    || | |||    |   ||  |||    ||||  |  ||   |  |      || ||  ||| |||  ||      
AGAATATGCAGTTGGGATCAAGAATGTCACGATAAATGATAACTTCTTCCCTGGGCATTTCCCCGAACGACCCATAATGCCTGGTGTTCTCATGGTTGAGgtatgattccactatattggc---atccatgtgctgtgatcaaattgtt-tagtatatatggcctctgttgtt--tcctgaggtttgatcatctctcattgtggtc

upper sequence: PP1S196_99V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G055667_T01 (Zea mays), 5'ss of exon 3
GGAGTCGGCTGTTGCCATAAAAAATGTGACTATCAATGACAACTTCTTCCCTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtcatttcagggatttga-tcatcttgatatgaatgtaac--attgcagtgcgcatggtttaggtcaataatgtaatagtgtgggcatttctattt
 || |  |||||||| || || |||||||| || ||||| ||||||||||| || || |||||  | || ||||| |||||||| || |||||||| ||||||     |  | ||     |||   |  | ||||||   |  |  |  ||||   |||   || || |  ||| || ||  ||   |     | |  | || 
AGAATATGCTGTTGCAATCAAGAATGTGACAATAAATGATAACTTCTTCCCAGGGCATTTCCCTGAACGACCCATAATGCCTGGTGTTCTCATGGTCGAGgtatataatattctcgttatttttcctttttttgatacctacattgcttattgagatgcaattgtttca--tcattattgacatgtagactaaagtgatgtt-

upper sequence: PP1S196_99V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA08G19200.1 (Glycine max), 5'ss of exon 2
GGAGTCGGCTGTTGCCATAAAAAATGTGACTATCAATGACAACTTCTTCCCTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtcatttcagggatttgatcatcttgatatgaatgtaacattgcagtgcgcatggtttaggtc-aataatgtaatagtgtgggcatttctattt-
 |  || || || || ||||| |||||||| || |||||||||||||| ||||| || || ||  |  |||||||||||||||| || || ||||| ||||||  |    ||  ||      |  |    ||| | |   | | |  ||    ||  | ||  ||   || ||  |||| ||  |         || |||| 
AGTTTCTGCAGTGGCTATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCCATCATGCCTGGTGTTCTAATGGTTGAGgtactaaaatatg-cactatgctcctacctttgttgtatctcttat-ttattttgtccttgccttgtctctaaacatgtcatgataaaatggaatcaatttg

upper sequence: PP1S196_99V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA15G05800.1 (Glycine max), 5'ss of exon 3
GGAGTCGGCTGTTGCCATAAAAAATGTGACTATCAATGACAACTTCTTCCCTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtcat---ttcagggatttgat-catcttgatatgaatgtaacattgcagtgcgcatggtttaggtcaataatgtaatagtgtgggcatttctattt
 |  || || || |||||||| |||||||| || |||||||||||||| ||||| || || ||  |  |||| ||||||||||| || || ||||| ||||||  |    ||    |  |    ||| | | |     ||    | | | ||  |        | ||     ||     | |||   |||     |        
AGTTTCTGCAGTGGCCATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCAATCATGCCTGGTGTTCTAATGGTCGAGgtactaaactatacactgtgctgcttgctgcctgcccctacctttattatatctctaattattttgtccttttcttgtctctaaacatgttatggtaaaa----

upper sequence: PP1S196_99V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: AT2G22230.1 (Arabidopsis thaliana), 5'ss of exon 3
GGAGTCGGCTGTTGCCATAAAAAATGTGACTATCAATGACAACTTCTTCCCTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaa-gacgtcatttcagggatttgatcatcttgatatgaatgtaacattgcagtgcgcatggtttaggtcaa-taatgtaatagtgtgggcat-ttctattt
 |  || ||||| || || || ||||| || ||||||||||| ||||||||||| || |||||  | || || ||||||||||| || |||||| | |||||||  |      || |  | |   | | | |||   | ||    |      | |  | |     || || |  |  |||| |  | |    ||  | ||   
TGTTTCAGCTGTAGCTATTAAGAATGTCACCATCAATGACAATTTCTTCCCTGGCCATTTCCCTGAACGACCAATCATGCCTGGTGTTCTCATGATTGAGgtaataataatcgtttaaagttgcaaac-ttttgtcctcaagaagatcaaatattttgtaattgatatgttagctgttgtattcctttcaaaatgctttaa--

upper sequence: PP1S196_99V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: Vv00s0357g00020.t01 (Vitis vinifera), 5'ss of exon 3
GGAGTCGGCTGTTGCCATAAAAAATGTGACTATCAATGACAACTTCTTCCCTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtcatttcagggatttgatcatcttgatatgaatgtaacattgcagtgcgca-tggtttaggtcaataatgtaatagtgtgggcatttctattt
|   || || || || || || ||||||||||| || || |||||||| ||||| ||||||||  || |||| || |||||||| ||||||||||| |||||||   |    ||     | || ||  |||| || |||||  ||  |   ||     |   |   | ||    ||  |||     |   ||| | | |  
GATCTCAGCAGTAGCAATTAAGAATGTGACTATAAACGATAACTTCTTTCCTGGGCACTTCCCTGAGAGGCCAATTATGCCTGGTGTGCTCATGGTTGAGgtaatttgcttattgccaaacttcatgttcttcatttgaattcaatttactagaaaataacagaaaatgtttgaaaaataaagaactcaacatatttgtg-

upper sequence: PP1S196_99V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: Vv12s0055g01100.t01 (Vitis vinifera), 5'ss of exon 3
GGAGTCGGCTGTTGCCATAAAAAATGTGACTATCAATGACAACTTCTTCCCTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtcatttcagggatttgatcatcttgatatgaatgtaacattgcagtgcgcatggt-ttaggtcaataatgtaatagtgtgggcatttctattt---
 |  || |||||||||||||| ||||| || || ||||| |||||||| ||||| || || ||| || |||| || |||||||| || |||||||| |||||||    |  || | |    ||    || ||  | |   | ||   ||||| |     |    |||  |  || | ||||   |||   ||||| |  |    
AGTTTCTGCTGTTGCCATAAAGAATGTAACAATAAATGATAACTTCTTTCCTGGGCATTTTCCCGAGAGGCCAATTATGCCTGGTGTTCTCATGGTTGAGgtaatttcttgttcccgtaccttttaaatatttttttttctttag--ttgcattatttttaaagttacatgtatgaggtaa--atgtttccatttttgctacaa

upper sequence: PP1S196_99V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: Vv00s0357g00070.t01 (Vitis vinifera), 5'ss of exon 3
-GGAGTCGGCTGTTGCCATAAAAAATGTGACTATCAATGACAACTTCTTCCCTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtcatttcagggatttgatcatcttgatatgaatgtaacattgcagtgcgcatg-gtttaggtcaataatgtaatagtgtgggcatttctattt
 |   || ||  | || || || ||||||||||| ||  | |||||||| ||||| ||||||||  || |||| || |||||||| ||||||||||| |||||||   |    ||     | || ||  |||| || |||||  ||  |   ||     |   |   | ||    ||  |||     | | ||| | | |  
GGATCTCAGCAATAGCAATTAAGAATGTGACTAT-AACAATAACTTCTTTCCTGGGCACTTCCCTGAGAGGCCAATTATGCCTGGTGTGCTCATGGTTGAGgtaatttgcttattgccaaactttatgttcttcatttgaattcaatttactagaaaataaaagaaaatgtttgaaaaataaagaactcgacatatttgtg-

upper sequence: PP1S196_99V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EDP03190 (Chlamydomonas reinhardtii), 5'ss of exon 2
-----------------GGAGTCGGCTGTTGCCATAAAAAATGTGACTATCAATGACAACTTCTTCCCTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtcatttcagggatttgatcatcttgatatgaatgtaacattgcagtgcgcatggtttag-gtcaataatgtaatagtgtgggcatttctattt
                 | |||  ||||| | |   ||   ||| || || || |||||||||||||| || ||||||||| |||| || ||||||||||| | |    |  | |   | ||  |  | |     |  | |  |||   | |  | | | ||| | || || |  ||| |  || |     |   || | |  |              
GTTGAGTGGGAGAAGGAGAAGTACGCTGTGGGCTACAAGTGTGTCACCATTAACGACAACTTCTTCCCAGGCCACTTCCCCGAGCGCCCTATCATGCCTGgtgagtgacttcttggcatcagcagcgactc----gtctgggccatggcggtgcgcacgcaac-tagctgtacagatgctacagcgctgtcagcctacttgaatt-------------

upper sequence: PP1S196_99V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ31102 (Selaginella moellendorffii), 5'ss of exon 2
GGAGTCGGCTGTTGCCATAAAAAATGTGACTATCAATGACAACTTCTTCCCTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtcatttcagggatttgatcatcttgatatgaatgtaacattgcagtgcgcatggtttaggtcaataatgtaatagtgtgggcatttctattt
 |   |||| || |  || ||||| ||||| ||||||||||| |||||||| || ||||| ||  || | || ||||||||||| || |||||||| ||||||  |    ||   ||  |    ||  |||||   |   | ||| |      |||      ||||  ||     |  |                     
TGTCACGGCAGTAGGGATTAAAAACGTGACGATCAATGACAATTTCTTCCCCGGCCACTTTCCGGAGAGACCGATCATGCCTGGAGTTCTCATGGTTGAGgtagaaaacgatg--agacagagaattttcttg-cgtagttctaatacgttcatgct-----tttaaatcttctgtccag--------------------

upper sequence: PP1S196_99V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ06529 (Selaginella moellendorffii), 5'ss of exon 3
GGAGTCGGCTGTTGCCATAAAAAATGTGACTATCAATGACAACTTCTTCCCTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtcatttcagggatttgatcatcttgatatgaatgtaacattgcagtgcgcatggtttaggtcaataatgtaatagtgtgggcatttctattt
 |   |||| || |  || ||||| ||||| ||||||||||| |||||||| || ||||| ||  || | || ||||||||||| || |||||||| ||||||  |    ||   ||  |    ||  |||||   |   | | |   |   |        ||  ||                                 
TGTCACGGCAGTAGGGATTAAAAACGTGACGATCAATGACAATTTCTTCCCCGGCCACTTTCCGGAGAGACCGATCATGCCTGGAGTTCTCATGGTTGAGgtagaaaacgatg--agacagagaattttcttg-cgtagttctcatgcttttgaaatttctgtccag---------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67578858|gb|BJ951025.1|BJ951025
EST:     CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAG                         GCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
genomic: CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtc ... gcgagagtagGCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
EST: gi|162250963|gb|FC425785.1|FC425785
EST:     CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAG                         GCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
genomic: CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtc ... gcgagagtagGCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
EST: gi|208367751|gb|DC943997.1|DC943997
EST:     CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAG                         GCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
genomic: CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtc ... gcgagagtagGCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
EST: gi|162212777|gb|FC388577.1|FC388577
EST:     CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAG                         GCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
genomic: CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtc ... gcgagagtagGCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
EST: gi|208380703|gb|DC903251.1|DC903251
EST:     CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAG                         GCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
genomic: CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtc ... gcgagagtagGCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
EST: gi|100386210|gb|BY987877.1|BY987877
EST:     CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAG                         GCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGG
genomic: CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtc ... gcgagagtagGCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGG
EST: gi|208389565|gb|DC929462.1|DC929462
EST:     CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAG                         GCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
genomic: CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtc ... gcgagagtagGCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
EST: gi|162210209|gb|FC386408.1|FC386408
EST:     CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAG                         GCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
genomic: CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtc ... gcgagagtagGCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
EST: gi|208347566|gb|DC925523.1|DC925523
EST:     CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAG                         GCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
genomic: CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtc ... gcgagagtagGCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
EST: gi|208358227|gb|DC934504.1|DC934504
EST:     CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAG                         GCTATGGCGCAAGTAGGANGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
genomic: CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtc ... gcgagagtagGCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
EST: gi|208371901|gb|DC951865.1|DC951865
EST:     CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAG                         GCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
genomic: CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtc ... gcgagagtagGCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
EST: gi|162210208|gb|FC386407.1|FC386407
EST:     CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAG                         GCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
genomic: CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtc ... gcgagagtagGCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
EST: gi|208363314|gb|DC954430.1|DC954430
EST:     CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAG                         GCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
genomic: CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtc ... gcgagagtagGCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
EST: gi|67507592|gb|BJ940473.1|BJ940473
EST:     CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAG                         GCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
genomic: CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtc ... gcgagagtagGCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
EST: gi|162250964|gb|FC425786.1|FC425786
EST:     CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAG                         GCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
genomic: CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtc ... gcgagagtagGCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
EST: gi|162234073|gb|FC410534.1|FC410534
EST:     CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAG                         GCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
genomic: CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtc ... gcgagagtagGCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
EST: gi|208387858|gb|DC941427.1|DC941427
EST:     CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTANAG                         GCTATGGCGCAAGTANGAGGTATTGTAATGTTGCANCCGGATGTGGGGGGC
genomic: CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtc ... gcgagagtagGCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
EST: gi|162233508|gb|FC410890.1|FC410890
EST:     CTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAG                         GCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
genomic: CTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtc ... gcgagagtagGCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
EST: gi|162234074|gb|FC410535.1|FC410535
EST:     CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAG                         GCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
genomic: CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtc ... gcgagagtagGCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
EST: gi|208357990|gb|DC938847.1|DC938847
EST:     CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAG                         GCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
genomic: CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtc ... gcgagagtagGCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
EST: gi|208347228|gb|DC917159.1|DC917159
EST:     CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAG                         GCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCNGATGTGGGGGGC
genomic: CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtc ... gcgagagtagGCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
EST: gi|208379848|gb|DC911733.1|DC911733
EST:     CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAG                         GCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
genomic: CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtc ... gcgagagtagGCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
EST: gi|37846853|gb|BJ604861.1|BJ604861
EST:     CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAG                         GCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
genomic: CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtc ... gcgagagtagGCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
EST: gi|37822458|gb|BJ580524.1|BJ580524
EST:     CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAG                         GCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC
genomic: CTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtc ... gcgagagtagGCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 4

GGAGTCGGCTGTTGCCATAAAAAATGTGACTATCAATGACAACTTCTTCCCTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtc ... gcgagagtagGCTATGGCGCAAGTAGGAGGTATTGTAATGTTGCAGCCGGATGTGGGGGGCTCAAAGGAATCGTTCTTCTTCGCTGGAGTAGACAAAGTGCGTTTCCGCA




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