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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAGTAGGGGCGTCCTCTGTTGGTGCGAGTGCAGTGGCGTCTTGCATTGTGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGTGATGTAGTCTGAGgtgaagatacttggccgatcttgttgttggagcgggggaatggggtgttgtctgcgagatagtgtgtgtggagcaattgttgttggaggtctctggatat...

Basic information

species Physcomitrella patens
transcript PP1S194_4V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162248455|gb|FC423723.1|FC423723
EST:     TGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGTGATGTAGTCTGAG                         TTATCTCGGGCGTGGACGGGCAATGCTGGTTAGCTACTGCTGACAGGAAAC
genomic: TGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGTGATGTAGTCTGAGgtgaagatac ... tgcattgtagTTATCTCGGGCGTGGACGGGCAATGCTGGTTAGCTACTGCTGACAGGAAAC
EST: gi|18364641|gb|BJ196714.1|BJ196714
EST:     TGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGTGATGTAGTCTGAG                         TTATCTCGGGCGTGGACGGGCAATGCTGGTTAGCTACTGCTGACAGGAAAC
genomic: TGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGTGATGTAGTCTGAGgtgaagatac ... tgcattgtagTTATCTCGGGCGTGGACGGGCAATGCTGGTTAGCTACTGCTGACAGGAAAC
EST: gi|18325437|gb|BJ157433.1|BJ157433
EST:     TGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGTGATGTAGTCTGAG                         TTATCTCGGGCGTGGACGGGCAATGCTGGTTAGCTACTGCTGACAGGAAAC
genomic: TGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGTGATGTAGTCTGAGgtgaagatac ... tgcattgtagTTATCTCGGGCGTGGACGGGCAATGCTGGTTAGCTACTGCTGACAGGAAAC
EST: gi|208391520|gb|DC937668.1|DC937668
EST:     TGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGTGATGTAGTCTGAG                         TTATCTCGGGCGTGGACGGGCAATGCTGGTTAGCTACTGCTGACAGGAAAC
genomic: TGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGTGATGTAGTCTGAGgtgaagatac ... tgcattgtagTTATCTCGGGCGTGGACGGGCAATGCTGGTTAGCTACTGCTGACAGGAAAC
EST: gi|18360784|gb|BJ192847.1|BJ192847
EST:     TGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGTGATGTAGTCTGAG                         TTATCTCGGGCGTGGACGGGCAATGCTGGTTAGCTACTGCTGACAGGAAAC
genomic: TGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGTGATGTAGTCTGAGgtgaagatac ... tgcattgtagTTATCTCGGGCGTGGACGGGCAATGCTGGTTAGCTACTGCTGACAGGAAAC
EST: gi|100404285|gb|BY955348.1|BY955348
EST:     TGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGTGATGTAGTCTGAG                         TTATCTCGGGCGTGGACGGGCAATGCTGGTTAGCTACTGCTGACAGGAAAC
genomic: TGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGTGATGTAGTCTGAGgtgaagatac ... tgcattgtagTTATCTCGGGCGTGGACGGGCAATGCTGGTTAGCTACTGCTGACAGGAAAC
EST: gi|100423513|gb|BY958297.1|BY958297
EST:     TGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGTGATGTAGTCTGAG                         TTATCTCGGGCGTGGACGGGCAATGCTGGTTAGCTACTGCTGACAGGAAAC
genomic: TGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGTGATGTAGTCTGAGgtgaagatac ... tgcattgtagTTATCTCGGGCGTGGACGGGCAATGCTGGTTAGCTACTGCTGACAGGAAAC
EST: gi|18328394|gb|BJ160399.1|BJ160399
EST:     TGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGTGATGTAGTCTGAG                         TTATCTCGGGCGTGGACGGGCAATGCTGGTTAGCTACTGCTGACAGGAAAC
genomic: TGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGTGATGTAGTCTGAGgtgaagatac ... tgcattgtagTTATCTCGGGCGTGGACGGGCAATGCTGGTTAGCTACTGCTGACAGGAAAC
EST: gi|100371406|gb|BY967965.1|BY967965
EST:     TGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGTGATGTAGTCTGAG                         TTATCTCGGGCGTGGACGGGCAATGCTGGTTAGCTACTGCTGACAGGAAAC
genomic: TGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGTGATGTAGTCTGAGgtgaagatac ... tgcattgtagTTATCTCGGGCGTGGACGGGCAATGCTGGTTAGCTACTGCTGACAGGAAAC
EST: gi|18363343|gb|BJ195415.1|BJ195415
EST:     TGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGTGATGTAGTCTGAG                         TTATCTCGGGCGTGGACGGGCAATGCTGGTTAGCTACTGCTGACAGGAAAC
genomic: TGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGTGATGTAGTCTGAGgtgaagatac ... tgcattgtagTTATCTCGGGCGTGGACGGGCAATGCTGGTTAGCTACTGCTGACAGGAAAC
EST: gi|67574744|gb|BJ947568.1|BJ947568
EST:     TGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGNGATGTAGTCTGAN                         TTATCTCGGGCGTGGACGGGCAATGCTGGTTAGCTACTGCTGACAGGAAAC
genomic: TGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGTGATGTAGTCTGAGgtgaagatac ... tgcattgtagTTATCTCGGGCGTGGACGGGCAATGCTGGTTAGCTACTGCTGACAGGAAAC
EST: gi|67571933|gb|BJ944757.1|BJ944757
EST:     TGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGTGATGTAGTCTGAG                         TTATCTCGGGCGTGGACGGGCAATGCTGGTTAGCTACTGCTGACAGGAAAC
genomic: TGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGTGATGTAGTCTGAGgtgaagatac ... tgcattgtagTTATCTCGGGCGTGGACGGGCAATGCTGGTTAGCTACTGCTGACAGGAAAC
EST: gi|162176900|gb|FC352862.1|FC352862
EST:     TGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGTGATGTAGTCTGAG                         TTATCTCGGGCGTGGACGGGCAATGCTGGTTAGCTACTGCTGACAGGAAAC
genomic: TGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGTGATGTAGTCTGAGgtgaagatac ... tgcattgtagTTATCTCGGGCGTGGACGGGCAATGCTGGTTAGCTACTGCTGACAGGAAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCAGTAGGGGCGTCCTCTGTTGGTGCGAGTGCAGTGGCGTCTTGCATTGTGGGTCGGGTGTGGAGGAGGAGGACGATGGTTGTGGTGATGTAGTCTGAGgtgaagatacttggccgatcttgttgttggagcgggggaatggggtgttgtctgcgagatagtgtgtgtggagcaattgttgttggaggtctctggatat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA